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ACD18_11

Alias: ACD18_2064.29034.22

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_11_1

Not on your lists

comp(65..5134)
DNA (5070bp) protein (1690aa)
Kelch repeat protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C5E (db=UNIREF evalue=3.0e-07 bit_score=62.8 identity=26.43 coverage=23.6686390532544)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
seg (db=Seg db_id=seg from=1672 to=1683)
seg (db=Seg db_id=seg from=1444 to=1456)
ACD18_11_2

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comp(5707..7686)
DNA (1980bp) protein (660aa)
VanW family protein
VanW family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEB1_THET1 (db=UNIREF evalue=4.0e-39 bit_score=166.0 identity=30.37 coverage=60.6060606060606)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=625 to=650)
ACD18_11_3

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comp(7700..8161)
DNA (462bp) protein (154aa)
hypothetical protein
Small heat shock protein n=3 Tax=candidate division TM7 RepID=UPI00016B2686 (db=UNIREF evalue=1.0e-14 bit_score=82.0 identity=34.06 coverage=85.0649350649351)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=5 to=150 evalue=8.3e-25 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
no description (db=Gene3D db_id=G3DSA:2.60.40.790 from=37 to=151 evalue=6.9e-20)
ACD18_11_4

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8805..10433
DNA (1629bp) protein (543aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=99)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
transmembrane_regions (db=TMHMM db_id=tmhmm from=154 to=176)
ACD18_11_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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10552..10935
DNA (384bp) protein (128aa)
Vitamin K epoxide reductase
Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1NA82_9CHLO (db=UNIREF evalue=1.0e-14 bit_score=82.0 identity=42.55 coverage=70.3125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=2 to=20)
ACD18_11_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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10944..11471
DNA (528bp) protein (176aa)
disulfide bond formation protein DsbB
transmembrane_regions (db=TMHMM db_id=tmhmm from=148 to=170)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
ACD18_11_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(11658..12353)
DNA (696bp) protein (232aa)
Competence protein F, putative n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZE2_9BACT (db=UNIREF evalue=5.0e-31 bit_score=137.0 identity=34.5 coverage=94.3965517241379)
phosphoribosyltransferase
PRTase-like (db=superfamily db_id=SSF53271 from=44 to=230 evalue=1.6e-21)
Pribosyltran (db=HMMPfam db_id=PF00156 from=140 to=225 evalue=1.9e-11 interpro_id=IPR000836 interpro_description=Phosphoribosyltransferase GO=Biological Process: nucleoside metabolic process (GO:0009116))
ACD18_11_8

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comp(12370..12960)
DNA (591bp) protein (197aa)
seg (db=Seg db_id=seg from=50 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE07339.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_11_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(12970..14853)
DNA (1884bp) protein (628aa)
Type IV secretory pathway VirB4 components-like protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS14_9BACT (db=UNIREF evalue=3.0e-172 bit_score=608.0 identity=48.84 coverage=94.2675159235669)
Type IV secretory pathway VirB4 components-like protein
Type IV secretory pathway VirB4 components-like protein
ACD18_11_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(14972..15658)
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS15_9BACT (db=UNIREF evalue=3.0e-36 bit_score=155.0 identity=39.72 coverage=90.3930131004367)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=13)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_11_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(15865..16296)
DNA (432bp) protein (144aa)
seg (db=Seg db_id=seg from=51 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
seg 51..64 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_11_12
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16309..17676)
DNA (1368bp) protein (456aa)
seg (db=Seg db_id=seg from=390 to=401)
seg 390..401 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_11_13
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17762..18790)
DNA (1029bp) protein (343aa)
seg (db=Seg db_id=seg from=259 to=272)
coiled-coil (db=Coil db_id=coil from=300 to=321 evalue=NA)
coiled-coil (db=Coil db_id=coil from=252 to=276 evalue=NA)
coiled-coil 252..276 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_11_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18816..22967)
DNA (4152bp) protein (1384aa)
seg (db=Seg db_id=seg from=857 to=868)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
weak hit to transporter Jill Banfield (11/15/12)
ACD18_11_15

Not on your lists

comp(23263..24552)
DNA (1290bp) protein (430aa)
Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGZ6_CLOAI (db=UNIREF evalue=6.0e-147 bit_score=524.0 identity=60.84 coverage=99.3023255813954)
asparaginyl-tRNA synthetase
asparaginyl-tRNA synthetase
seg (db=Seg db_id=seg from=344 to=357)
ACD18_11_16

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comp(24782..25420)
DNA (639bp) protein (213aa)
DNA repair protein RecO
seg (db=Seg db_id=seg from=107 to=126)
RecO_N (db=HMMPfam db_id=PF11967 from=4 to=72 evalue=9.7e-16)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=4 to=74 evalue=1.6e-13 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD18_11_17
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(25587..25970)
DNA (384bp) protein (128aa)
putative Holliday junction resolvase (EC:3.1.-.-)
seg (db=Seg db_id=seg from=45 to=56)
UPF0081 (db=HMMPfam db_id=PF03652 from=1 to=125 evalue=2.3e-27 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=125 evalue=3.2e-24 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
ACD18_11_18

Not on your lists

comp(26081..27700)
DNA (1620bp) protein (540aa)
seg (db=Seg db_id=seg from=4 to=21)
seg (db=Seg db_id=seg from=268 to=282)
transmembrane_regions (db=TMHMM db_id=tmhmm from=426 to=448)
transmembrane_regions (db=TMHMM db_id=tmhmm from=404 to=422)
ACD18_11_19
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(27744..28565)
DNA (822bp) protein (274aa)
methionine aminopeptidase (EC:3.4.11.18)
seg (db=Seg db_id=seg from=4 to=27)
seg (db=Seg db_id=seg from=183 to=194)
met_pdase_I: methionine aminopeptidase, t (db=HMMTigr db_id=TIGR00500 from=3 to=266 evalue=2.3e-87 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
ACD18_11_20
unknown

Not on your lists

comp(29007..29072)
DNA (66bp) protein (22aa)
29007..29072 - (rbs_motif=None rbs_spacer=None)
Displaying 20 items

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