Alias: ACD18_26347.11769.22
name | lists | location/seqs | annotations | notes |
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ACD18_34_1
uncultured bacterium, Bacteria
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Not on your lists |
comp(2..685)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=8 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE07095.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD18_34_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(775..2016)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
LytR_cpsA_psr (db=HMMPfam db_id=PF03816 from=93 to=172 evalue=4.5e-05 interpro_id=IPR004474 interpro_description=Cell envelope-related transcriptional attenuator)
transmembrane_regions 7..29 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
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ACD18_34_3
uncultured bacterium, Bacteria
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Not on your lists |
comp(2165..2470)
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ada; 6-O-methylguanine DNA methyltransferase (EC:2.1.1.63)
MGMT (db=PatternScan db_id=PS00374 from=69 to=75 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
DNA_binding_1 (db=HMMPfam db_id=PF01035 from=20 to=100 evalue=2.3e-30 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10815 from=14 to=101 evalue=2.9e-27 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
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DNA repair?
Jill Banfield
(11/15/12)
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ACD18_34_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(2589..2786)
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2589..2786 - (rbs_motif=TTAA rbs_spacer=9bp)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
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ACD18_34_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(2862..4217)
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ATP-dependent RNA helicase RhlE
ATP-dependent RNA helicase RhlE
Putative ATP-dependent RNA helicase RhlE n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D514_MYXXD (db=UNIREF evalue=1.0e-98 bit_score=363.0 identity=47.97 coverage=80.0884955752212)
seg (db=Seg db_id=seg from=398 to=438)
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ACD18_34_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
4586..4783
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hypothetical protein
Probable cold shock protein scoF n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQQ8_9PLAN (db=UNIREF evalue=2.0e-11 bit_score=71.2 identity=56.45 coverage=92.4242424242424)
Cold shock protein, CspA type (db=HMMPIR db_id=PIRSF002599 from=1 to=65 evalue=1.5e-19 interpro_id=IPR012156 interpro_description=Cold shock, CspA GO=Molecular Function: nucleic acid binding (GO:0003676))
CSD (db=HMMPfam db_id=PF00313 from=1 to=63 evalue=1.6e-18 interpro_id=IPR002059 interpro_description=Cold-shock protein, DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD18_34_7
uncultured bacterium, Bacteria
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Not on your lists |
5796..5972
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5796..5972 + (rbs_motif=TTAA rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE07087.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD18_34_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(6303..6758)
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hypothetical protein
Bet v1-like (db=superfamily db_id=SSF55961 from=1 to=151 evalue=2.3e-16)
AHSA1 (db=HMMPfam db_id=PF08327 from=12 to=150 evalue=7.8e-07 interpro_id=IPR013538 interpro_description=Activator of Hsp90 ATPase homologue 1-like GO=Biological Process: response to stress (GO:0006950))
hypothetical protein alias=ACD18_26347.11769.22G0008,ACD18_26347.11769.22_8,ACD18_C00034G00008 id=13206 tax=ACD18 species=Leptospira interrogans genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes organism_group=OD1, not OD1-i organism_desc= OD1
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ACD18_34_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(6946..7380)
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3-demethylubiquinone-9 3-methyltransferase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=143 evalue=3.1e-34)
no description (db=Gene3D db_id=G3DSA:3.10.180.30 from=1 to=141 evalue=1.3e-26)
3-dmu-9_3-mt (db=HMMPfam db_id=PF06983 from=3 to=137 evalue=2.7e-10)
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EC 2.1.1.64: Ubiquinone and other terpenoid-quinone biosynthesis
However, PhnB is anthranilate synthase subunit
Jill Banfield
(11/15/12)
However, PhnB is anthranilate synthase subunit
Jill Banfield
(11/15/12)
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ACD18_34_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(7621..8418)
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Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJZ4_9GAMM (db=UNIREF evalue=2.0e-11 bit_score=72.8 identity=27.24 coverage=91.3533834586466)
seg (db=Seg db_id=seg from=88 to=99)
TrmB (db=HMMPfam db_id=PF01978 from=11 to=66 evalue=1.8e-10 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=103 evalue=3.4e-08)
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ACD18_34_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
8589..8984
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seg (db=Seg db_id=seg from=120 to=131)
seg 120..131 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
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ACD18_34_12
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(9468..9773)
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Rhodanese domain-containing protein
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=1 to=96 evalue=2.1e-26 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=Gene3D db_id=G3DSA:3.40.250.10 from=1 to=97 evalue=4.3e-25 interpro_id=IPR001763 interpro_description=Rhodanese-like)
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ACD18_34_13
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(9949..10935)
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trpS; tryptophanyl-tRNA synthetase
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=12 to=21 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
trpS: tryptophan--tRNA ligase (db=HMMTigr db_id=TIGR00233 from=2 to=327 evalue=6.4e-110 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase, class Ib GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
TRYPTOPHANYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR10055 from=9 to=327 evalue=1.4e-87 interpro_id=IPR002306 interpro_description=Tryptophanyl-tRNA synthetase, class Ib GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436))
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ACD18_34_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(11071..11331)
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chorismate mutase
Chorismate mutase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIH7_9EURY (db=UNIREF evalue=2.0e-08 bit_score=61.6 identity=37.65 coverage=96.551724137931)
CM_2 (db=HMMPfam db_id=PF01817 from=8 to=86 evalue=2.3e-17 interpro_id=IPR020822 interpro_description=Chorismate mutase, type II GO=Biological Process: chorismate metabolic process (GO:0046417))
Chorismate mutase II (db=superfamily db_id=SSF48600 from=2 to=85 evalue=2.1e-16 interpro_id=IPR020822 interpro_description=Chorismate mutase, type II GO=Biological Process: chorismate metabolic process (GO:0046417))
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