ggKbase home page

ACD18_35

Alias: ACD18_1638.8791.22

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_35_1
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

591..1178
DNA (588bp) protein (196aa)
lexA; repressor protein LexA
LexA repressor n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KLL6_9FIRM (db=UNIREF evalue=5.0e-27 bit_score=124.0 identity=37.07 coverage=97.9591836734694)
seg (db=Seg db_id=seg from=61 to=73)
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=1 to=194 evalue=3.6e-29 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD18_35_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

1187..2356
DNA (1170bp) protein (390aa)
hypothetical protein
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
hypothetical protein alias=ACD18_1638.8791.22G0002,ACD18_1638.8791.22_2,ACD18_C00035G00002 id=13217 tax=ACD18 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1, not OD1-i organism_desc= OD1
ACD18_35_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

2373..3260
DNA (888bp) protein (296aa)
seg (db=Seg db_id=seg from=243 to=253)
seg (db=Seg db_id=seg from=179 to=196)
seg (db=Seg db_id=seg from=156 to=174)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=1 to=150 evalue=8.8e-06)
ACD18_35_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

3265..3954
DNA (690bp) protein (230aa)
hypothetical protein (db=KEGG evalue=6.0e-12 bit_score=74.3 identity=30.99 coverage=71.304347826087)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
hypothetical protein alias=ACD18_1638.8791.22G0004,ACD18_1638.8791.22_4,ACD18_C00035G00004 id=13221 tax=ACD18 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=OD1, not OD1-i organism_desc= OD1
ACD18_35_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3958..4461)
DNA (504bp) protein (168aa)
seg (db=Seg db_id=seg from=149 to=165)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
DUF559 (db=HMMPfam db_id=PF04480 from=98 to=164 evalue=2.3e-08 interpro_id=IPR007569 interpro_description=Protein of unknown function DUF559)
seg 149..165 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_35_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

4713..5423
DNA (711bp) protein (237aa)
coiled-coil (db=Coil db_id=coil from=184 to=205 evalue=NA)
coiled-coil 184..205 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_35_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

5525..5890
DNA (366bp) protein (122aa)
5525..5890 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_35_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

6106..6327
DNA (222bp) protein (74aa)
6106..6327 + (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_35_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

6302..7969
DNA (1668bp) protein (556aa)
Resolvase, N terminal domain family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J816_9RHOB (db=UNIREF evalue=5.0e-35 bit_score=152.0 identity=30.44 coverage=77.6978417266187)
site-specific recombinase, resolvase family
coiled-coil (db=Coil db_id=coil from=439 to=467 evalue=NA)
Resolvase-like (db=superfamily db_id=SSF53041 from=9 to=182 evalue=3.9e-15 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
ACD18_35_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8054..8170)
DNA (117bp) protein (39aa)
seg (db=Seg db_id=seg from=9 to=29)
coiled-coil (db=Coil db_id=coil from=8 to=29 evalue=NA)
coiled-coil 8..29 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_35_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8243..8725)
DNA (483bp) protein (161aa)
seg (db=Seg db_id=seg from=49 to=61)
seg 49..61 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
Displaying 11 items

View Taxonomy