ggKbase home page

ACD18_39

Alias: ACD18_7129.39938.22

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_39_1

Not on your lists

1..1323
DNA (1323bp) protein (441aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
seg (db=Seg db_id=seg from=415 to=438)
seg (db=Seg db_id=seg from=303 to=322)
coiled-coil (db=Coil db_id=coil from=285 to=306 evalue=NA)
ACD18_39_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

1381..1767
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2W5_9BACT (db=UNIREF evalue=6.0e-17 bit_score=89.7 identity=46.96 coverage=86.046511627907)
S23 ribosomal protein
Uncharacterised conserved protein, UCP035652 type (db=HMMPIR db_id=PIRSF035652 from=1 to=119 evalue=7.0e-30 interpro_id=IPR012657 interpro_description=Conserved hypothetical protein CHP02436)
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=10 to=103 evalue=5.0e-10 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
ACD18_39_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

2188..5889
DNA (3702bp) protein (1234aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=1055 to=1066)
seg (db=Seg db_id=seg from=907 to=918)
seg (db=Seg db_id=seg from=807 to=829)
ACD18_39_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

6303..6590
DNA (288bp) protein (96aa)
putative toxin-antitoxin system antitoxin component ribbon-helix-helix domain-containing protein
RelB (db=HMMPfam db_id=PF04221 from=4 to=76 evalue=1.4e-11 interpro_id=IPR007337 interpro_description=RelB antitoxin)
RelB_DinJ: addiction module antitoxin, RelB (db=HMMTigr db_id=TIGR02384 from=1 to=93 evalue=4.0e-11 interpro_id=IPR007337 interpro_description=RelB antitoxin)
putative toxin-antitoxin system antitoxin component ribbon-helix-helix domain-containing protein; K07473 DNA-damage-inducible protein J Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_39_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

6602..6883
DNA (282bp) protein (94aa)
Toxin-antitoxin system, toxin component, RelE family n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LBU6_RUMHA (db=UNIREF evalue=2.0e-19 bit_score=97.4 identity=55.79 coverage=96.8085106382979)
addiction module toxin, RelE/StbE family
RelE_StbE: addiction module toxin, RelE/Stb (db=HMMTigr db_id=TIGR02385 from=4 to=92 evalue=6.4e-26 interpro_id=IPR012753 interpro_description=Addiction module toxin, RelE/StbE)
RelE-like (db=superfamily db_id=SSF143011 from=1 to=92 evalue=2.4e-23)
ACD18_39_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

6983..7807
DNA (825bp) protein (275aa)
prophage antirepressor
prophage antirepressor
Prophage antirepressor n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G6Z0_GEOUR (db=UNIREF evalue=1.0e-103 bit_score=379.0 identity=72.06 coverage=98.1818181818182)
seg (db=Seg db_id=seg from=231 to=247)
ACD18_39_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

8117..8731
DNA (615bp) protein (205aa)
hypothetical protein
seg (db=Seg db_id=seg from=124 to=144)
Transposase IS200-like (db=superfamily db_id=SSF143422 from=10 to=199 evalue=8.9e-19)
Transposase_17 (db=HMMPfam db_id=PF01797 from=141 to=192 evalue=0.00011 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
ACD18_39_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

8856..9473
DNA (618bp) protein (206aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9C8_9ARCH (db=UNIREF evalue=1.0e-14 bit_score=83.2 identity=31.28 coverage=89.3203883495146)
seg (db=Seg db_id=seg from=95 to=104)
seg (db=Seg db_id=seg from=106 to=115)
ACD18_39_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

9475..10263
DNA (789bp) protein (263aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GQ82_9DELT (db=UNIREF evalue=1.0e-23 bit_score=113.0 identity=30.31 coverage=92.0152091254753)
seg (db=Seg db_id=seg from=78 to=91)
DUF1814 (db=HMMPfam db_id=PF08843 from=34 to=218 evalue=2.2e-16 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
ACD18_39_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

10329..12335
DNA (2007bp) protein (669aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EW30_9FIRM (db=UNIREF evalue=4.0e-09 bit_score=67.4 identity=32.89 coverage=21.0762331838565)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
ACD18_39_11

Not on your lists

12553..12906
DNA (354bp) protein (118aa)
DNA methylase, putative n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XGZ5_9FLAO (db=UNIREF evalue=1.0e-20 bit_score=101.0 identity=50.0 coverage=86.4406779661017)
leucyl-tRNA synthetase
DUF559 (db=HMMPfam db_id=PF04480 from=9 to=114 evalue=5.4e-34 interpro_id=IPR007569 interpro_description=Protein of unknown function DUF559)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=15 to=116 evalue=1.8e-18 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
ACD18_39_12

Not on your lists

12997..14013
DNA (1017bp) protein (339aa)
GDP-mannose 4,6-dehydratase
GDP-mannose 4,6-dehydratase
GDP-D-mannose dehydratase n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QWK6_BRAHW (db=UNIREF evalue=4.0e-134 bit_score=481.0 identity=70.15 coverage=93.5103244837758)
seg (db=Seg db_id=seg from=279 to=297)
ACD18_39_13
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

14280..15236
DNA (957bp) protein (319aa)
nucleoside-diphosphate-sugar epimerase
nucleoside-diphosphate-sugar epimerase
NAD-dependent epimerase/dehydratase n=1 Tax=Methanohalophilus mahii DSM 5219 RepID=D5E8W6_METMS (db=UNIREF evalue=2.0e-115 bit_score=419.0 identity=63.96 coverage=94.6708463949843)
GDP-FUCOSE SYNTHETASE (db=HMMPanther db_id=PTHR10366:SF27 from=9 to=317 evalue=1.2e-155)
ACD18_39_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

15362..15604
DNA (243bp) protein (81aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=8 to=56 evalue=5.5e-07 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
excise: DNA binding domain, excisionase fami 8..56 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_39_15
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

15652..16512
DNA (861bp) protein (287aa)
3-beta hydroxysteroid dehydrogenase/isomerase family protein
3-beta hydroxysteroid dehydrogenase/isomerase family protein
ADP-L-glycero-D-mannoheptose-6-epimerase n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BIY2_9PROT (db=UNIREF evalue=8.0e-110 bit_score=400.0 identity=70.11 coverage=97.5609756097561)
seg (db=Seg db_id=seg from=217 to=232)
ACD18_39_16

Not on your lists

16539..17357
DNA (819bp) protein (273aa)
ABC-2 type transporter
ABC-2 type transporter n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GEL4_GEOUR (db=UNIREF evalue=2.0e-70 bit_score=268.0 identity=48.73 coverage=98.9010989010989)
seg (db=Seg db_id=seg from=151 to=165)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
ACD18_39_17

Not on your lists

17377..17634
DNA (258bp) protein (86aa)
GIY-YIG catalytic protein
GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=70 evalue=2.5e-16 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=72 evalue=3.6e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
no description (db=HMMSmart db_id=SM00465 from=1 to=85 evalue=1.2e-05 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD18_39_18

Not on your lists

17652..18917
DNA (1266bp) protein (422aa)
ABC transporter ATP binding protein n=1 Tax=Methanocella paludicola SANAE RepID=D1YZY5_METPS (db=UNIREF evalue=1.0e-141 bit_score=506.0 identity=61.41 coverage=98.5781990521327)
ABC transporter ATP-binding protein rbh
ABC transporter ATP-binding protein rbh
SIALIC ACID ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF2 from=6 to=246 evalue=3.4e-99)
ACD18_39_19

Not on your lists

18924..19637
DNA (714bp) protein (238aa)
SAM-dependent methyltransferase
Putative SAM-dependent methyltransferase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ96_9PROT (db=UNIREF evalue=3.0e-36 bit_score=155.0 identity=38.1 coverage=86.9747899159664)
seg (db=Seg db_id=seg from=2 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKE06669.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_39_20

Not on your lists

19663..20445
DNA (783bp) protein (261aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
DUF268 (db=HMMPfam db_id=PF03269 from=152 to=228 evalue=1.4e-18 interpro_id=IPR004951 interpro_description=Protein of unknown function DUF268, Caenorhabditis species)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=65 to=252 evalue=1.3e-08)
ACD18_39_21

Not on your lists

20458..21192
DNA (735bp) protein (245aa)
methylase
Methyltransferase type 11 n=1 Tax=Cylindrospermopsis raciborskii CS-505 RepID=D4TLN5_9NOST (db=UNIREF evalue=1.0e-44 bit_score=183.0 identity=46.09 coverage=90.6122448979592)
seg (db=Seg db_id=seg from=86 to=98)
seg (db=Seg db_id=seg from=219 to=233)
ACD18_39_22

Not on your lists

21204..22070
DNA (867bp) protein (289aa)
glycosyl transferase family 11
GALACTOSIDE 2-L-FUCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR11927 from=1 to=288 evalue=6.6e-51 interpro_id=IPR002516 interpro_description=Glycosyl transferase, family 11 GO=Cellular Component: Golgi apparatus (GO:0005794), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107), Cellular Component: membrane (GO:0016020))
Glyco_transf_11 (db=HMMPfam db_id=PF01531 from=6 to=287 evalue=4.3e-41 interpro_id=IPR002516 interpro_description=Glycosyl transferase, family 11 GO=Cellular Component: Golgi apparatus (GO:0005794), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107), Cellular Component: membrane (GO:0016020))
Glycosyl transferase family 11 {ECO:0000313|EMBL:EKE06672.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_39_23

Not on your lists

22067..22984
DNA (918bp) protein (306aa)
family 2 glycosyl transferase
Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY70_9DELT (db=UNIREF evalue=3.0e-38 bit_score=162.0 identity=38.5 coverage=72.5490196078431)
seg (db=Seg db_id=seg from=259 to=274)
transmembrane_regions (db=TMHMM db_id=tmhmm from=250 to=269)
ACD18_39_24

Not on your lists

22993..23877
DNA (885bp) protein (295aa)
glycosyl transferase 2 family protein
sugar transferase n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5FD (db=UNIREF evalue=5.0e-67 bit_score=258.0 identity=46.34 coverage=96.9491525423729)
seg (db=Seg db_id=seg from=171 to=184)
seg (db=Seg db_id=seg from=254 to=264)
ACD18_39_25

Not on your lists

23881..24675
DNA (795bp) protein (265aa)
FkbM family methyltransferase
fkbM_fam: methyltransferase, FkbM family (db=HMMTigr db_id=TIGR01444 from=75 to=208 evalue=2.7e-29 interpro_id=IPR006342 interpro_description=Methyltransferase FkbM)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=53 to=155 evalue=1.7e-06)
FkbM family methyltransferase {ECO:0000313|EMBL:EKE06675.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_39_26

Not on your lists

24678..25871
DNA (1194bp) protein (398aa)
glycosyl transferase
seg (db=Seg db_id=seg from=155 to=164)
seg (db=Seg db_id=seg from=264 to=275)
seg (db=Seg db_id=seg from=246 to=257)
ACD18_39_27

Not on your lists

25877..26602
DNA (726bp) protein (242aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=198 to=220)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=240 evalue=5.0e-20)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=16 to=172 evalue=1.8e-16)
ACD18_39_28

Not on your lists

26599..27369
DNA (771bp) protein (257aa)
type 11 methyltransferase
seg (db=Seg db_id=seg from=24 to=35)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=44 to=235 evalue=1.0e-20)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=85 to=171 evalue=9.5e-16 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
ACD18_39_29

Not on your lists

27371..28204
DNA (834bp) protein (278aa)
glycosyl transferase family protein
GALACTOSIDE 2-L-FUCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR11927 from=1 to=277 evalue=4.9e-49 interpro_id=IPR002516 interpro_description=Glycosyl transferase, family 11 GO=Cellular Component: Golgi apparatus (GO:0005794), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107), Cellular Component: membrane (GO:0016020))
Glyco_transf_11 (db=HMMPfam db_id=PF01531 from=2 to=275 evalue=4.5e-34 interpro_id=IPR002516 interpro_description=Glycosyl transferase, family 11 GO=Cellular Component: Golgi apparatus (GO:0005794), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107), Cellular Component: membrane (GO:0016020))
Glycosyl transferase family 11 {ECO:0000313|EMBL:EKE06679.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_39_30

Not on your lists

28204..28989
DNA (786bp) protein (262aa)
family 2 glycosyl transferase
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=6 to=231 evalue=1.5e-57)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=6 to=234 evalue=1.8e-56)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR22916 from=14 to=256 evalue=7.3e-39)
Displaying items 1-30 of 37 in total

View Taxonomy