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ACD18_55

Alias: ACD18_736.26253.24

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_55_1

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comp(2..556)
DNA (555bp) protein (185aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=34 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKE06647.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_55_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(1586..3286)
DNA (1701bp) protein (567aa)
sodium/hydrogen exchanger
seg (db=Seg db_id=seg from=363 to=374)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
ACD18_55_3

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comp(3401..7198)
DNA (3798bp) protein (1266aa)
hypothetical protein
seg (db=Seg db_id=seg from=550 to=561)
seg (db=Seg db_id=seg from=463 to=481)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD18_55_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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7323..7625
DNA (303bp) protein (101aa)
hypothetical protein
seg (db=Seg db_id=seg from=29 to=43)
hypothetical protein alias=ACD18_C00055G00004,ACD18_736.26253.24G0004,ACD18_736.26253.24_4 id=13496 tax=ACD18 species=Methanocaldococcus sp. FS406-22 genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_group=OD1, not OD1-i organism_desc= OD1
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_55_5

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comp(7797..9194)
DNA (1398bp) protein (466aa)
peptidase M23 family protein
seg (db=Seg db_id=seg from=185 to=196)
seg (db=Seg db_id=seg from=81 to=91)
seg (db=Seg db_id=seg from=47 to=68)
ACD18_55_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(9636..10184)
DNA (549bp) protein (183aa)
hypothetical protein (db=KEGG evalue=3.0e-09 bit_score=64.3 identity=38.02 coverage=57.9234972677596)
seg (db=Seg db_id=seg from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_55_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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10388..13234
DNA (2847bp) protein (949aa)
1A family penicillin-binding protein
1A family penicillin-binding protein
Penicillin-binding protein, 1A family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B6Z4_HERA2 (db=UNIREF evalue=3.0e-122 bit_score=444.0 identity=42.47 coverage=61.4330874604847)
seg (db=Seg db_id=seg from=40 to=55)
ACD18_55_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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13364..14320
DNA (957bp) protein (319aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=242 to=263 evalue=NA)
seg (db=Seg db_id=seg from=56 to=69)
DUF2419 (db=HMMPfam db_id=PF10343 from=53 to=317 evalue=1.0e-69 interpro_id=IPR019438 interpro_description=Protein of unknown function DUF2419)
ACD18_55_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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14329..15084
DNA (756bp) protein (252aa)
Predicted protein n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=D6APB7_STRFL (db=UNIREF evalue=5.0e-25 bit_score=118.0 identity=26.94 coverage=94.8412698412698)
seg (db=Seg db_id=seg from=16 to=27)
DNase I-like (db=superfamily db_id=SSF56219 from=1 to=246 evalue=2.4e-23 interpro_id=IPR005135 interpro_description=Endonuclease/exonuclease/phosphatase)
Exo_endo_phos (db=HMMPfam db_id=PF03372 from=1 to=184 evalue=1.1e-12 interpro_id=IPR005135 interpro_description=Endonuclease/exonuclease/phosphatase)
ACD18_55_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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15071..15532
DNA (462bp) protein (154aa)
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
coiled-coil 3..24 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_55_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(15597..16724)
DNA (1128bp) protein (376aa)
DNA polymerase III, beta subunit
seg (db=Seg db_id=seg from=136 to=146)
no description (db=HMMSmart db_id=SM00480 from=17 to=371 evalue=3.9e-80 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
dnan: DNA polymerase III, beta subunit (db=HMMTigr db_id=TIGR00663 from=1 to=375 evalue=4.8e-79 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
ACD18_55_12
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(17005..18390)
DNA (1386bp) protein (462aa)
Chromosomal replication initiator protein dnaA n=1 Tax=Bacillus sp. B14905 RepID=A3IAV0_9BACI (db=UNIREF evalue=6.0e-126 bit_score=454.0 identity=48.9 coverage=95.4545454545455)
dnaA; chromosome replication initiator DnaA
dnaA; chromosome replication initiator DnaA
DnaA: chromosomal replication initiator prot (db=HMMTigr db_id=TIGR00362 from=7 to=456 evalue=1.5e-225 interpro_id=IPR001957 interpro_description=Chromosomal replication control, initiator DnaA GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA replication origin binding (GO:0003688), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275))
ACD18_55_13
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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18802..18978
DNA (177bp) protein (59aa)
rpmH; hypothetical protein
RIBOSOMAL_L34 (db=PatternScan db_id=PS00784 from=3 to=22 evalue=0.0 interpro_id=IPR020939 interpro_description=Ribosomal protein L34, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L34 (db=HMMPfam db_id=PF00468 from=2 to=45 evalue=6.1e-24 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmH_bact: ribosomal protein L34 (db=HMMTigr db_id=TIGR01030 from=2 to=45 evalue=1.8e-21 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD18_55_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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19218..19598
DNA (381bp) protein (127aa)
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5] (db=KEGG evalue=2.0e-08 bit_score=61.6 identity=33.6 coverage=87.4015748031496)
RIBONUCLEASE_P (db=PatternScan db_id=PS00648 from=62 to=76 evalue=0.0 interpro_id=IPR020539 interpro_description=Ribonuclease P, conserved site)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=6 to=123 evalue=3.2e-18 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Ribonuclease_P (db=HMMPfam db_id=PF00825 from=3 to=120 evalue=2.9e-17 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
ACD18_55_15
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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19781..20047
DNA (267bp) protein (89aa)
yidD; YidD
seg (db=Seg db_id=seg from=5 to=19)
seg (db=Seg db_id=seg from=56 to=66)
DUF37 (db=HMMPfam db_id=PF01809 from=16 to=86 evalue=7.7e-23 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
ACD18_55_16
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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20239..20460
DNA (222bp) protein (74aa)
yggU
DUF167 (db=HMMPfam db_id=PF02594 from=2 to=72 evalue=1.2e-22 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
YggU-like (db=superfamily db_id=SSF69786 from=1 to=72 evalue=1.7e-18 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
no description (db=Gene3D db_id=G3DSA:3.30.1200.10 from=2 to=71 evalue=3.9e-18 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
ACD18_55_17
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(20501..21271)
DNA (771bp) protein (257aa)
Transcriptional regulator, TrmB n=1 Tax=Burkholderia sp. Ch1-1 RepID=D5NS62_9BURK (db=UNIREF evalue=6.0e-14 bit_score=81.3 identity=24.56 coverage=85.2140077821012)
transcriptional regulator TrmB (db=KEGG evalue=2.0e-10 bit_score=69.7 identity=25.88 coverage=91.0505836575876)
TrmB (db=HMMPfam db_id=PF01978 from=15 to=74 evalue=9.2e-13 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=96 evalue=6.1e-06)
ACD18_55_18
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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21398..22921
DNA (1524bp) protein (508aa)
type 11 methyltransferase
coiled-coil (db=Coil db_id=coil from=94 to=115 evalue=NA)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=283 evalue=1.5e-36)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=6 to=261 evalue=1.3e-24)
ACD18_55_19
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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22935..24479
DNA (1545bp) protein (515aa)
2-hydroxyacid dehydrogenase (EC:1.1.1.272)
seg (db=Seg db_id=seg from=313 to=330)
seg (db=Seg db_id=seg from=344 to=357)
2-Hacid_dh_C (db=HMMPfam db_id=PF02826 from=333 to=459 evalue=1.5e-25 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
ACD18_55_20
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(24510..25886)
DNA (1377bp) protein (459aa)
tig; trigger factor (EC:5.2.1.8)
Trigger factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V0N0_9FIRM (db=UNIREF evalue=7.0e-52 bit_score=208.0 identity=30.5 coverage=91.0675381263617)
seg (db=Seg db_id=seg from=202 to=214)
coiled-coil (db=Coil db_id=coil from=368 to=396 evalue=NA)
Displaying 20 items

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