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ACD18_71

Alias: ACD18_25181.16825.22

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_71_1
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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272..1645
DNA (1374bp) protein (458aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteinyl-tRNA synthetase n=2 Tax=Dictyoglomus RepID=SYC_DICT6 (db=UNIREF evalue=2.0e-141 bit_score=506.0 identity=57.39 coverage=99.1266375545851)
coiled-coil (db=Coil db_id=coil from=323 to=351 evalue=NA)
ACD18_71_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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1744..2340
DNA (597bp) protein (199aa)
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
seg (db=Seg db_id=seg from=85 to=95)
coiled-coil 75..96 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_71_3

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2345..4918
DNA (2574bp) protein (858aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT (db=UNIREF evalue=4.0e-162 bit_score=575.0 identity=40.52 coverage=87.1794871794872)
hypothetical protein
seg (db=Seg db_id=seg from=37 to=46)
seg (db=Seg db_id=seg from=291 to=303)
ACD18_71_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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5065..5772
DNA (708bp) protein (236aa)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2 (db=UNIREF evalue=1.0e-24 bit_score=116.0 identity=40.4 coverage=59.7457627118644)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
hypothetical protein
ACD18_71_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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5777..6856
DNA (1080bp) protein (360aa)
acyltransferase 3
transmembrane_regions (db=TMHMM db_id=tmhmm from=315 to=334)
transmembrane_regions (db=TMHMM db_id=tmhmm from=278 to=300)
transmembrane_regions (db=TMHMM db_id=tmhmm from=249 to=271)
ACD18_71_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(6912..7187)
DNA (276bp) protein (92aa)
hypothetical protein
no description (db=HMMSmart db_id=SM00151 from=9 to=88 evalue=1.9e-36 interpro_id=IPR019835 interpro_description=SWIB domain)
SWIB (db=HMMPfam db_id=PF02201 from=10 to=83 evalue=1.9e-28 interpro_id=IPR003121 interpro_description=SWIB/MDM2 domain)
no description (db=Gene3D db_id=G3DSA:1.10.245.10 from=2 to=88 evalue=4.8e-27 interpro_id=IPR003121 interpro_description=SWIB/MDM2 domain)
ACD18_71_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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7354..8991
DNA (1638bp) protein (546aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau n=1 Tax=Thermincola sp. JR RepID=D5X8W4_9FIRM (db=UNIREF evalue=9.0e-88 bit_score=328.0 identity=35.35 coverage=90.6593406593407)
coiled-coil (db=Coil db_id=coil from=299 to=330 evalue=NA)
ACD18_71_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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9002..9997
DNA (996bp) protein (332aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=134 to=146)
EF_HAND_1 (db=PatternScan db_id=PS00018 from=244 to=256 evalue=0.0 interpro_id=IPR018247 interpro_description=EF-Hand 1, calcium-binding site)
EF_HAND_2 (db=ProfileScan db_id=PS50222 from=231 to=266 evalue=8.293 interpro_id=IPR018249 interpro_description=EF-HAND 2)
ACD18_71_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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10286..10717
DNA (432bp) protein (144aa)
seg (db=Seg db_id=seg from=130 to=143)
seg 130..143 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_71_10

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comp(10756..11373)
DNA (618bp) protein (206aa)
soluble cytochrome b558
Delta 5 fatty acid desaturase n=1 Tax=Polysphondylium pallidum PN500 RepID=D3BMF1_POLPA (db=UNIREF evalue=8.0e-10 bit_score=67.0 identity=40.54 coverage=35.4368932038835)
seg (db=Seg db_id=seg from=80 to=99)
seg (db=Seg db_id=seg from=20 to=35)
Delta5 and Delta6 fatty acid desaturases for the biosynthesis of the polyunsaturated fatty acids arachidonic, eicosapentaenoic, and docosahexaenoic acid Jill Banfield (11/15/12)
ACD18_71_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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11526..12545
DNA (1020bp) protein (340aa)
hypothetical protein
Predicted radical SAM enzyme, Cfr type (db=HMMPIR db_id=PIRSF006004 from=1 to=339 evalue=2.2e-124 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
TIGR00048: radical SAM enzyme, Cfr family (db=HMMTigr db_id=TIGR00048 from=1 to=338 evalue=2.7e-103 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
Radical_SAM (db=HMMPfam db_id=PF04055 from=97 to=269 evalue=1.3e-12 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD18_71_12

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comp(12693..14180)
DNA (1488bp) protein (496aa)
putative membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Collagenolytic protease {ECO:0000313|EMBL:EKE07116.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
collagenolytic protease alias=ACD18_25181.16825.22G0012,ACD18_25181.16825.22_12,ACD18_C00071G00012 id=13607 tax=ACD18 species=Clostridium botulinum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1, not OD1-i organism_desc= OD1
ACD18_71_13

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comp(14449..16587)
DNA (2139bp) protein (713aa)
copper-translocating P-type ATPase
copper-translocating P-type ATPase
Copper-translocating P-type ATPase n=9 Tax=Thermoanaerobacteraceae RepID=D3T3V2_THEIA (db=UNIREF evalue=2.0e-168 bit_score=596.0 identity=48.15 coverage=95.9326788218794)
transmembrane_regions (db=TMHMM db_id=tmhmm from=666 to=688)
Displaying 13 items

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