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ACD18_91

Alias: ACD18_1113.13521.23

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_91_1
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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124..705
DNA (582bp) protein (194aa)
seg (db=Seg db_id=seg from=99 to=119)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
seg 99..119 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_91_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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707..2545
DNA (1839bp) protein (613aa)
RND family efflux transporter, MFP subunit
seg (db=Seg db_id=seg from=101 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=48)
seg (db=Seg db_id=seg from=210 to=229)
ACD18_91_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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2550..3260
DNA (711bp) protein (237aa)
ABC transporter related n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5F9X3_FLAJ1 (db=UNIREF evalue=5.0e-67 bit_score=257.0 identity=54.05 coverage=92.4050632911392)
macrolide ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=149 to=163 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=7 to=225 evalue=1.3e-104)
ACD18_91_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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3427..4638
DNA (1212bp) protein (404aa)
hypothetical protein
seg (db=Seg db_id=seg from=26 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=280 to=302)
ACD18_91_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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4842..5108
DNA (267bp) protein (89aa)
4842..5108 + (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_91_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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5239..5562
DNA (324bp) protein (108aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions 7..26 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_91_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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5569..7332
DNA (1764bp) protein (588aa)
multi-sensor signal transduction histidine kinase
seg (db=Seg db_id=seg from=24 to=38)
seg (db=Seg db_id=seg from=357 to=364)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
ACD18_91_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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7359..7736
DNA (378bp) protein (126aa)
two-component response regulator
Two-component response regulator n=1 Tax=Arthrospira platensis NIES-39 RepID=D4ZRU3_SPIPL (db=UNIREF evalue=4.0e-16 bit_score=87.0 identity=42.86 coverage=81.7460317460317)
CheY-like (db=superfamily db_id=SSF52172 from=3 to=123 evalue=4.7e-28 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=3 to=118 evalue=3.8e-24 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD18_91_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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7888..9417
DNA (1530bp) protein (510aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=308 to=330)
seg (db=Seg db_id=seg from=19 to=36)
seg (db=Seg db_id=seg from=311 to=325)
ACD18_91_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

9420..11768
DNA (2349bp) protein (783aa)
hypothetical protein
seg (db=Seg db_id=seg from=308 to=323)
seg (db=Seg db_id=seg from=186 to=197)
DUF1704 (db=HMMPfam db_id=PF08014 from=456 to=769 evalue=2.3e-47 interpro_id=IPR012548 interpro_description=Protein of unknown function DUF1704)
ACD18_91_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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11911..13287
DNA (1377bp) protein (459aa)
hypothetical protein
seg (db=Seg db_id=seg from=142 to=151)
GLYCOSYLTRANSFERASE 1 FAMILY (db=HMMPanther db_id=PTHR21015:SF21 from=345 to=419 evalue=0.00027)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR21015 from=345 to=419 evalue=0.00027)
ACD18_91_12
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

13465..13560
DNA (96bp) protein (32aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=20)
Uncharacterized protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
Displaying 12 items

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