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ACD18_98

Alias: ACD18_1639.2740.21

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_98_1

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383..862
DNA (480bp) protein (160aa)
seg (db=Seg db_id=seg from=125 to=142)
seg (db=Seg db_id=seg from=12 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
ACD18_98_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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898..1539
DNA (642bp) protein (214aa)
HD domain protein
seg (db=Seg db_id=seg from=193 to=213)
HD (db=HMMPfam db_id=PF01966 from=26 to=129 evalue=8.2e-11 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=21 to=174 evalue=1.4e-08)
ACD18_98_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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1545..1895
DNA (351bp) protein (117aa)
hypothetical protein
seg (db=Seg db_id=seg from=15 to=26)
T4 endonuclease V (db=superfamily db_id=SSF47077 from=1 to=113 evalue=4.7e-24 interpro_id=IPR021143 interpro_description=Pyrimidine dimer DNA glycosylase, endonuclease V type)
Pyr_excise (db=HMMPfam db_id=PF03013 from=1 to=98 evalue=5.6e-14 interpro_id=IPR004260 interpro_description=Pyrimidine dimer DNA glycosylase)
ACD18_98_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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1899..2258
DNA (360bp) protein (120aa)
hypothetical protein
seg (db=Seg db_id=seg from=24 to=44)
DUF1801 (db=HMMPfam db_id=PF08818 from=25 to=115 evalue=4.7e-17 interpro_id=IPR014922 interpro_description=Protein of unknown function DUF1801)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_98_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(2284..2784)
DNA (501bp) protein (167aa)
site-specific recombinase XerD
seg (db=Seg db_id=seg from=62 to=75)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=1 to=165 evalue=8.0e-44 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=11 to=157 evalue=6.5e-43 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Displaying 5 items

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