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ACD18_100

Alias: ACD18_573.7598.21

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_100_1
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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953..1141
DNA (189bp) protein (63aa)
seg (db=Seg db_id=seg from=18 to=32)
seg (db=Seg db_id=seg from=44 to=56)
seg 18..32 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_100_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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1414..2325
DNA (912bp) protein (304aa)
seg (db=Seg db_id=seg from=74 to=93)
PP2C-like (db=superfamily db_id=SSF81606 from=43 to=303 evalue=1.7e-15 interpro_id=IPR001932 interpro_description=Protein phosphatase 2C-related GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=Gene3D db_id=G3DSA:3.60.40.10 from=41 to=303 evalue=6.8e-12 interpro_id=IPR001932 interpro_description=Protein phosphatase 2C-related GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=HMMSmart db_id=SM00332 from=34 to=302 evalue=0.0035 interpro_id=IPR001932 interpro_description=Protein phosphatase 2C-related GO=Molecular Function: catalytic activity (GO:0003824))
ACD18_100_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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2336..2689
DNA (354bp) protein (118aa)
seg (db=Seg db_id=seg from=4 to=15)
seg 4..15 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_100_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(2774..2947)
DNA (174bp) protein (58aa)
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=34 evalue=3.7e-11 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28p-like (db=superfamily db_id=SSF143800 from=3 to=51 evalue=1.5e-07)
Ribosomal_L28 3..34 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_100_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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2999..3181
DNA (183bp) protein (61aa)
2999..3181 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_100_6

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3235..3864
DNA (630bp) protein (210aa)
transmembrane protein
Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6S8_9FIRM (db=UNIREF evalue=1.0e-31 bit_score=139.0 identity=44.64 coverage=73.8095238095238)
seg (db=Seg db_id=seg from=55 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD18_100_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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3922..5598
DNA (1677bp) protein (559aa)
coiled-coil (db=Coil db_id=coil from=189 to=210 evalue=NA)
coiled-coil 189..210 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_100_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(5635..5898)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CHK9_9BACI (db=UNIREF evalue=5.0e-08 bit_score=60.1 identity=41.1 coverage=81.8181818181818)
coiled-coil (db=Coil db_id=coil from=64 to=85 evalue=NA)
DUF2164 (db=HMMPfam db_id=PF09932 from=11 to=83 evalue=1.6e-19 interpro_id=IPR018680 interpro_description=Protein of unknown function DUF2164)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_100_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(5900..6280)
DNA (381bp) protein (127aa)
5900..6280 - (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_100_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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6622..7047
DNA (426bp) protein (142aa)
rpsL; 30S ribosomal protein S12
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=58 to=65 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsL_bact: ribosomal protein S12 (db=HMMTigr db_id=TIGR00981 from=1 to=139 evalue=2.8e-82 interpro_id=IPR005679 interpro_description=Ribosomal protein S12, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Ribosomal protein, S12p/S12a/S23e/organellar S12 types (db=HMMPIR db_id=PIRSF002133 from=1 to=139 evalue=2.4e-71 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD18_100_11

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7167..7637
DNA (471bp) protein (157aa)
30S ribosomal protein S7
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=19 to=45 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
rpsG_bact: ribosomal protein S7 (db=HMMTigr db_id=TIGR01029 from=2 to=155 evalue=5.2e-84 interpro_id=IPR005717 interpro_description=Ribosomal protein S7, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Ribosomal_S7 (db=HMMPfam db_id=PF00177 from=3 to=148 evalue=6.1e-54 interpro_id=IPR000235 interpro_description=Ribosomal protein S7 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 11 items

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