Alias: ACD18_16097.13827.24
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD18_101_1
uncultured bacterium, Bacteria
|
Not on your lists |
3..335
|
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase)(Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmu
seg (db=Seg db_id=seg from=23 to=37)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=1 to=110 evalue=2.8e-21)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=1 to=110 evalue=2.8e-21)
|
|
ACD18_101_2
uncultured bacterium, Bacteria
|
Not on your lists |
340..1446
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=273)
transmembrane_regions (db=TMHMM db_id=tmhmm from=277 to=299)
transmembrane_regions (db=TMHMM db_id=tmhmm from=320 to=339)
transmembrane_regions (db=TMHMM db_id=tmhmm from=343 to=360)
|
possible transporter
Jill Banfield
(11/15/12)
|
ACD18_101_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
1430..2158
|
family 2 glycosyl transferase
coiled-coil (db=Coil db_id=coil from=95 to=116 evalue=NA)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=189 evalue=4.1e-37)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=190 evalue=1.2e-36)
|
|
ACD18_101_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
comp(2118..3545)
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=158)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=224 to=246)
transmembrane_regions (db=TMHMM db_id=tmhmm from=259 to=281)
|
|
ACD18_101_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
comp(3650..4576)
|
methionyl-tRNA formyltransferase (EC:2.1.2.9)
fmt: methionyl-tRNA formyltransferase (db=HMMTigr db_id=TIGR00460 from=4 to=308 evalue=2.7e-85 interpro_id=IPR005794 interpro_description=Methionyl-tRNA formyltransferase GO=Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479), Biological Process: translation (GO:0006412))
Formyltransferase (db=superfamily db_id=SSF53328 from=1 to=203 evalue=1.0e-61 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
no description (db=Gene3D db_id=G3DSA:3.40.50.170 from=1 to=205 evalue=4.0e-60 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
|
|
ACD18_101_6
uncultured bacterium, Bacteria
|
Not on your lists |
comp(4649..5146)
|
hypothetical protein
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=160 evalue=4.5e-52 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Pep_deformylase (db=HMMPfam db_id=PF01327 from=3 to=159 evalue=9.8e-50 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
POLYPEPTIDE DEFORMYLASE (db=HMMPanther db_id=PTHR10458 from=6 to=164 evalue=1.9e-48 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
|
|
ACD18_101_7
uncultured bacterium, Bacteria
|
Not on your lists |
comp(5209..7077)
|
primosome assembly protein PriA
seg (db=Seg db_id=seg from=158 to=169)
seg (db=Seg db_id=seg from=53 to=64)
priA: primosomal protein N' (db=HMMTigr db_id=TIGR00595 from=112 to=617 evalue=5.1e-55 interpro_id=IPR005259 interpro_description=Primosomal protein n GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA replication (GO:0006260))
|
|
ACD18_101_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
comp(7098..7889)
|
AMMECR1 domain-containing protein
LigB subunit of an aromatic-ring-opening dioxygenase LigAB (db=superfamily db_id=SSF53213 from=1 to=261 evalue=8.4e-33 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
LigB (db=HMMPfam db_id=PF02900 from=7 to=256 evalue=4.7e-29 interpro_id=IPR004183 interpro_description=Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725), Molecular Function: ferrous iron binding (GO:0008198), Molecular Function: oxidoreductase activity (GO:0016491))
no description (db=Gene3D db_id=G3DSA:3.40.830.10 from=1 to=218 evalue=1.3e-08)
|
|
ACD18_101_9
uncultured bacterium, Bacteria
|
Not on your lists |
comp(7900..9303)
|
hemagglutinin
hypothetical protein alias=ACD18_C00101G00009,ACD18_16097.13827.24G0009,ACD18_16097.13827.24_9 id=13831 tax=ACD18 species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OD1, not OD1-i organism_desc= OD1
Uncharacterized protein {ECO:0000313|EMBL:EKE07466.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
|
|
ACD18_101_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
9998..10393
|
9998..10393 + (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
|
|
ACD18_101_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
10596..11294
|
methyltransferase
Tetrapyrrole methylase (db=superfamily db_id=SSF53790 from=5 to=226 evalue=7.7e-74 interpro_id=IPR000878 interpro_description=Tetrapyrrole methylase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR21091 from=48 to=230 evalue=9.0e-47)
S-ADENOSYLMETHIONINE-DEPENDENT METHYTRANSFERASE (db=HMMPanther db_id=PTHR21091:SF18 from=48 to=230 evalue=9.0e-47)
|
|
ACD18_101_12
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
11317..11703
|
GxxExxY protein
seg (db=Seg db_id=seg from=65 to=78)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
hypothetical protein alias=ACD18_C00101G00012,ACD18_16097.13827.24G0012,ACD18_16097.13827.24_12 id=13829 tax=ACD18 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=OD1, not OD1-i organism_desc= OD1
|
|
ACD18_101_13
uncultured bacterium, Bacteria
|
Not on your lists |
11747..13240
|
methionyl-tRNA synthetase
methionyl-tRNA synthetase
Methionyl-tRNA synthetase n=2 Tax=Synechococcus RepID=Q2JJJ4_SYNJB (db=UNIREF evalue=8.0e-103 bit_score=378.0 identity=41.72 coverage=98.995983935743)
seg (db=Seg db_id=seg from=27 to=38)
|
|
ACD18_101_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria
|
Not on your lists |
13544..13867
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=86)
seg (db=Seg db_id=seg from=6 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Colicin_V (db=HMMPfam db_id=PF02674 from=5 to=107 evalue=4.5e-15 interpro_id=IPR003825 interpro_description=Colicin V production protein GO=Biological Process: toxin biosynthetic process (GO:0009403), Cellular Component: membrane (GO:0016020))
|