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ACD18_102

Alias: ACD18_10047.22122.22

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_102_1

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1..87
DNA (87bp) protein (29aa)
1..87 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE07704.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_102_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(439..1686)
DNA (1248bp) protein (416aa)
hypothetical protein
seg (db=Seg db_id=seg from=34 to=57)
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=11 to=193 evalue=4.0e-56)
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=204 to=412 evalue=3.2e-48)
ACD18_102_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(1919..2323)
DNA (405bp) protein (135aa)
seg (db=Seg db_id=seg from=3 to=14)
seg (db=Seg db_id=seg from=28 to=39)
coiled-coil (db=Coil db_id=coil from=41 to=62 evalue=NA)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=39 to=60 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
ACD18_102_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(2390..3826)
DNA (1437bp) protein (479aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Geobacter sp. FRC-32 RepID=GATA_GEOSF (db=UNIREF evalue=1.0e-127 bit_score=460.0 identity=51.88 coverage=98.7473903966597)
seg (db=Seg db_id=seg from=149 to=162)
ACD18_102_5

Not on your lists

comp(3941..4243)
DNA (303bp) protein (101aa)
seg (db=Seg db_id=seg from=7 to=19)
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=2 to=95 evalue=1.5e-20)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=3 to=97 evalue=9.7e-16 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln (db=HMMPfam db_id=PF02686 from=19 to=92 evalue=1.0e-14 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
ACD18_102_6

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comp(4784..6811)
DNA (2028bp) protein (676aa)
DNA ligase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=DNLJ_ANOFW (db=UNIREF evalue=4.0e-173 bit_score=612.0 identity=46.52 coverage=97.0414201183432)
ligA; NAD-dependent DNA ligase LigA
ligA; NAD-dependent DNA ligase LigA
seg (db=Seg db_id=seg from=242 to=248)
ACD18_102_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(6987..7763)
DNA (777bp) protein (259aa)
peptidase A24A domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=198 to=220)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=158)
ACD18_102_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7879..8322)
DNA (444bp) protein (148aa)
hypothetical protein
seg (db=Seg db_id=seg from=111 to=125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=4 to=24 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
ACD18_102_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(8374..8754)
DNA (381bp) protein (127aa)
two component transcriptional regulator, winged helix family
CheY-like (db=superfamily db_id=SSF52172 from=8 to=125 evalue=1.8e-28 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=8 to=124 evalue=5.2e-26)
no description (db=HMMSmart db_id=SM00448 from=6 to=120 evalue=1.1e-25 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD18_102_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(8828..9973)
DNA (1146bp) protein (382aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM (db=KEGG evalue=4.0e-23 bit_score=112.0 identity=25.97 coverage=89.5287958115183)
coiled-coil (db=Coil db_id=coil from=70 to=91 evalue=NA)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=216 to=381 evalue=2.0e-25)
Competence_A (db=HMMPfam db_id=PF11104 from=95 to=212 evalue=3.6e-10)
ACD18_102_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10065..10988)
DNA (924bp) protein (308aa)
metallo-beta-lactamase superfamily protein
Putative uncharacterized protein n=2 Tax=Bacillus cereus group RepID=C2NRS0_BACCE (db=UNIREF evalue=2.0e-38 bit_score=162.0 identity=38.11 coverage=79.8701298701299)
seg (db=Seg db_id=seg from=6 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
ACD18_102_12
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10985..12490)
DNA (1506bp) protein (502aa)
ComEC/Rec2-like protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=344 to=366)
transmembrane_regions (db=TMHMM db_id=tmhmm from=379 to=401)
transmembrane_regions (db=TMHMM db_id=tmhmm from=416 to=438)
ACD18_102_13
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12526..13956)
DNA (1431bp) protein (477aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT (db=UNIREF evalue=3.0e-10 bit_score=70.9 identity=22.11 coverage=74.2138364779874)
transmembrane_regions (db=TMHMM db_id=tmhmm from=110 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
seg (db=Seg db_id=seg from=360 to=371)
ACD18_102_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13960..14121)
DNA (162bp) protein (54aa)
seg (db=Seg db_id=seg from=5 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=51)
seg 5..21 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_102_15
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14509..15528)
DNA (1020bp) protein (340aa)
protein-export membrane protein SecF
seg (db=Seg db_id=seg from=10 to=31)
seg (db=Seg db_id=seg from=133 to=145)
seg (db=Seg db_id=seg from=171 to=186)
ACD18_102_16
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15536..17572)
DNA (2037bp) protein (679aa)
protein-export membrane protein SecD
Protein export protein SecD n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZBR5_NODSP (db=UNIREF evalue=5.0e-68 bit_score=263.0 identity=53.24 coverage=41.9734904270987)
transmembrane_regions (db=TMHMM db_id=tmhmm from=609 to=628)
transmembrane_regions (db=TMHMM db_id=tmhmm from=556 to=578)
ACD18_102_17

Not on your lists

17829..18527
DNA (699bp) protein (233aa)
17829..18527 + (rbs_motif=TAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE07703.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_102_18
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19392..22160)
DNA (2769bp) protein (923aa)
Protein translocase subunit secA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=SECA_THEYD (db=UNIREF evalue=0.0 bit_score=795.0 identity=46.95 coverage=90.5742145178765)
secA; preprotein translocase subunit A
secA; preprotein translocase subunit A
seg (db=Seg db_id=seg from=210 to=221)
Displaying 18 items

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