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ACD18_108

Alias: ACD18_384.14474.23

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_108_1
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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143..385
DNA (243bp) protein (81aa)
lp_hng_hel_AbrB: transcriptional regu (db=HMMTigr db_id=TIGR01439 from=18 to=60 evalue=1.9e-08 interpro_id=IPR006339 interpro_description=Transcription regulator AbrB)
AbrB/MazE/MraZ-like (db=superfamily db_id=SSF89447 from=12 to=62 evalue=2.0e-08)
SpoVT_AbrB (db=HMMPfam db_id=PF04014 from=21 to=52 evalue=3.9e-08 interpro_id=IPR007159 interpro_description=Transcription regulator AbrB/SpoV, predicted)
Q3MW00_9DELT_Q3MW00; (db=BlastProDom db_id=PD058861 from=21 to=67 evalue=0.001 interpro_id=IPR020154 interpro_description=Transcription regulator AbrB, subgroup)
ACD18_108_2

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394..2202
DNA (1809bp) protein (603aa)
RND family efflux transporter MFP subunit
seg (db=Seg db_id=seg from=4 to=15)
coiled-coil (db=Coil db_id=coil from=337 to=383 evalue=NA)
coiled-coil (db=Coil db_id=coil from=141 to=173 evalue=NA)
ACD18_108_3

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2239..3723
DNA (1485bp) protein (495aa)
cca; tRNA nucleotidyltransferase
cca; tRNA nucleotidyltransferase
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase n=2 Tax=Capnocytophaga RepID=C7M3H6_CAPOD (db=UNIREF evalue=9.0e-112 bit_score=407.0 identity=48.73 coverage=90.7070707070707)
seg (db=Seg db_id=seg from=376 to=390)
ACD18_108_4
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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3777..4199
DNA (423bp) protein (141aa)
seg (db=Seg db_id=seg from=103 to=113)
seg 103..113 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_108_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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4231..4956
DNA (726bp) protein (242aa)
ABC-type transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=145 to=159 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=222 evalue=2.1e-110)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=5 to=222 evalue=2.1e-110)
ACD18_108_6

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4975..6213
DNA (1239bp) protein (413aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTE5_9FIRM (db=UNIREF evalue=3.0e-64 bit_score=249.0 identity=43.28 coverage=96.8523002421308)
seg (db=Seg db_id=seg from=342 to=361)
seg (db=Seg db_id=seg from=25 to=39)
ACD18_108_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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6222..7463
DNA (1242bp) protein (414aa)
hypothetical protein
seg (db=Seg db_id=seg from=344 to=355)
seg (db=Seg db_id=seg from=284 to=296)
seg (db=Seg db_id=seg from=177 to=192)
ACD18_108_8

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7552..7911
DNA (360bp) protein (120aa)
S23 ribosomal
S23 ribosomal protein n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3ELY3_CHLPB (db=UNIREF evalue=2.0e-17 bit_score=91.7 identity=41.74 coverage=94.1666666666667)
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=9 to=113 evalue=9.7e-28 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
S23 ribosomal protein {ECO:0000313|EMBL:EKE06894.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD18_108_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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8013..8723
DNA (711bp) protein (237aa)
putative inner membrane protein translocase component YidC
60 kDa inner membrane insertion protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IK08_9CLOT (db=UNIREF evalue=2.0e-09 bit_score=66.2 identity=23.74 coverage=95.3586497890295)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=121)
ACD18_108_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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8750..9355
DNA (606bp) protein (202aa)
transporter, stomatin/podocin/band 7/nephrosis.2/spfh
HflC/HflK family protein n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JMD1_SYNJB (db=UNIREF evalue=1.0e-15 bit_score=86.7 identity=28.49 coverage=87.1287128712871)
Band_7 (db=HMMPfam db_id=PF01145 from=24 to=186 evalue=5.2e-21 interpro_id=IPR001107 interpro_description=Band 7 protein)
Band 7/SPFH domain (db=superfamily db_id=SSF117892 from=53 to=201 evalue=9.2e-12)
ACD18_108_11

Not on your lists

9609..10289
DNA (681bp) protein (227aa)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=2 to=85 evalue=1.4e-28 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=87 evalue=1.3e-23)
HrcA (db=HMMPfam db_id=PF01628 from=98 to=213 evalue=6.1e-08 interpro_id=IPR021153 interpro_description=Winged helix-turn-helix transcription repressor, HrcA, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD18_108_12

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10298..11209
DNA (912bp) protein (304aa)
GrpE protein HSP-70 cofactor
Hydrolase, nudix family, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFI4_9BACT (db=UNIREF evalue=1.0e-19 bit_score=100.0 identity=46.03 coverage=40.1315789473684)
seg (db=Seg db_id=seg from=148 to=161)
seg (db=Seg db_id=seg from=263 to=274)
ACD18_108_13

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11394..11828
DNA (435bp) protein (145aa)
heat shock protein Hsp20
seg (db=Seg db_id=seg from=130 to=144)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=19 to=141 evalue=5.3e-35 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
HEAT SHOCK PROTEIN 16 (db=HMMPanther db_id=PTHR11527:SF15 from=1 to=139 evalue=3.1e-34)
ACD18_108_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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11909..12436
DNA (528bp) protein (176aa)
hypothetical protein
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=2 to=173 evalue=2.1e-31 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=3 to=172 evalue=2.7e-18 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
GNAT (db=ProfileScan db_id=PS51186 from=6 to=174 evalue=10.235 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase GO=Molecular Function: N-acetyltransferase activity (GO:0008080), Biological Process: metabolic process (GO:0008152))
ACD18_108_15

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12916..14514
DNA (1599bp) protein (533aa)
dnaK; molecular chaperone
dnaK; molecular chaperone
Chaperone protein dnaK n=1 Tax=Geobacter lovleyi SZ RepID=DNAK_GEOLS (db=UNIREF evalue=0.0 bit_score=701.0 identity=68.22 coverage=99.06191369606)
seg (db=Seg db_id=seg from=368 to=382)
Displaying 15 items

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