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ACD18_125

Alias: ACD18_679.13138.23

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD18_125_1
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(2..295)
DNA (294bp) protein (98aa)
2..295 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_125_2
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(828..2288)
DNA (1461bp) protein (487aa)
seg (db=Seg db_id=seg from=18 to=29)
TPR-like (db=superfamily db_id=SSF48452 from=157 to=336 evalue=6.8e-08)
seg 18..29 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_125_3
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(2312..3010)
DNA (699bp) protein (233aa)
coiled-coil (db=Coil db_id=coil from=114 to=135 evalue=NA)
coiled-coil 114..135 Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
ACD18_125_4

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comp(3015..3866)
DNA (852bp) protein (284aa)
rfbD; dTDP-4-dehydrorhamnose reductase RfbD (EC:1.1.1.133)
seg (db=Seg db_id=seg from=30 to=41)
RmlD_sub_bind (db=HMMPfam db_id=PF04321 from=1 to=282 evalue=4.7e-83 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
rmlD: dTDP-4-dehydrorhamnose reductase (db=HMMTigr db_id=TIGR01214 from=2 to=283 evalue=4.3e-79 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
ACD18_125_5
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(3870..4286)
DNA (417bp) protein (139aa)
dTDP-6-deoxy-3,4-keto-hexulose isomerase n=1 Tax=Aneurinibacillus thermoaerophilus RepID=Q6T1W8_ANETH (db=UNIREF evalue=4.0e-17 bit_score=90.5 identity=36.07 coverage=85.6115107913669)
dTDP-6-deoxy-3,4-keto-hexulose isomerase
FdtA (db=HMMPfam db_id=PF05523 from=19 to=131 evalue=7.5e-29 interpro_id=IPR008894 interpro_description=WxcM-like, C-terminal)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=1 to=138 evalue=3.4e-07 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
ACD18_125_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(4305..5360)
DNA (1056bp) protein (352aa)
spsJ2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
spsJ2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Geobacillus stearothermophilus RepID=Q6WNH7_BACST (db=UNIREF evalue=5.0e-102 bit_score=374.0 identity=55.62 coverage=93.4659090909091)
seg (db=Seg db_id=seg from=113 to=124)
ACD18_125_7
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5378..5914)
DNA (537bp) protein (179aa)
NUDIX hydrolase (EC:3.6.1.13)
seg (db=Seg db_id=seg from=86 to=97)
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=4 to=177 evalue=4.2e-35 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=4 to=177 evalue=2.5e-34 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD18_125_8
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(6017..6424)
DNA (408bp) protein (136aa)
histidine triad (HIT) protein
HISTIDINE TRIAD (HIT) PROTEIN (db=HMMPanther db_id=PTHR23089 from=19 to=114 evalue=9.9e-25 interpro_id=IPR001310 interpro_description=Histidine triad (HIT) protein)
HIT_1 (db=PatternScan db_id=PS00892 from=86 to=104 evalue=0.0 interpro_id=IPR019808 interpro_description=Histidine triad, conserved site)
HIT-like (db=superfamily db_id=SSF54197 from=1 to=111 evalue=8.2e-45 interpro_id=IPR011146 interpro_description=Histidine triad-like motif GO=Molecular Function: catalytic activity (GO:0003824))
ACD18_125_9
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6426..7991)
DNA (1566bp) protein (522aa)
seg (db=Seg db_id=seg from=389 to=403)
seg (db=Seg db_id=seg from=322 to=338)
transmembrane_regions (db=TMHMM db_id=tmhmm from=390 to=407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=353 to=375)
ACD18_125_10
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7996..8619)
DNA (624bp) protein (208aa)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MET8_9BACT (db=UNIREF evalue=1.0e-15 bit_score=86.3 identity=35.56 coverage=63.4615384615385)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
ACD18_125_11
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8633..9814)
DNA (1182bp) protein (394aa)
glycosyl transferase GT4 family
seg (db=Seg db_id=seg from=118 to=132)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=369 evalue=2.2e-57)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=393 evalue=9.5e-42)
ACD18_125_12

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10149..11543
DNA (1395bp) protein (465aa)
replicative DNA helicase n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A0 (db=UNIREF evalue=2.0e-130 bit_score=469.0 identity=53.02 coverage=93.5483870967742)
replicative DNA helicase
replicative DNA helicase
DnaB: replicative DNA helicase (db=HMMTigr db_id=TIGR00665 from=10 to=456 evalue=2.1e-241 interpro_id=IPR007692 interpro_description=DNA helicase, DnaB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
ACD18_125_13
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

11715..12011
DNA (297bp) protein (99aa)
hypothetical protein; K09747 hypothetical protein (db=KEGG evalue=2.0e-08 bit_score=61.2 identity=35.71 coverage=95.959595959596)
coiled-coil (db=Coil db_id=coil from=5 to=29 evalue=NA)
YbaB-like (db=superfamily db_id=SSF82607 from=5 to=97 evalue=9.4e-18 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
DUF149 (db=HMMPfam db_id=PF02575 from=5 to=90 evalue=2.2e-17 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
ACD18_125_14
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

12061..12414
DNA (354bp) protein (118aa)
hypothetical protein
23S ribosomal protein n=1 Tax=Prevotella oris F0302 RepID=D1QRX1_9BACT (db=UNIREF evalue=4.0e-26 bit_score=120.0 identity=61.11 coverage=75.4237288135593)
seg (db=Seg db_id=seg from=92 to=106)
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=4 to=111 evalue=5.4e-42 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
ACD18_125_15
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

12466..13068
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FCI3_9BIFI (db=UNIREF evalue=1.0e-48 bit_score=196.0 identity=48.21 coverage=95.5223880597015)
DNA replication and repair protein RecR
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
RECR (db=PatternScan db_id=PS01300 from=56 to=77 evalue=0.0 interpro_id=IPR015967 interpro_description=Zinc finger C4-type, RecR GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Displaying 15 items

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