Alias: ACD18_208343.2919.5
name | lists | location/seqs | annotations | notes |
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ACD18_178_1
uncultured bacterium, Bacteria
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Not on your lists |
3..113
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rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 (db=KEGG evalue=3.0e-08 bit_score=60.8 identity=82.35 coverage=89.1891891891892)
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=6 to=36 evalue=1.8e-14 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L14 (db=HMMPanther db_id=PTHR11761:SF3 from=6 to=36 evalue=1.8e-14 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L14 (db=HMMPfam db_id=PF00238 from=3 to=36 evalue=2.4e-11 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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not used in concatenated phylogeny
kelly wrighton
(11/15/12)
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ACD18_178_2
uncultured bacterium, Bacteria
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Not on your lists |
147..467
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rplX; rplX
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=105 evalue=6.6e-37 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=106 evalue=8.0e-32 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translation proteins SH3-like domain (db=superfamily db_id=SSF50104 from=2 to=104 evalue=1.6e-27 interpro_id=IPR008991 interpro_description=Translation protein SH3-like)
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ACD18_178_3
uncultured bacterium, Bacteria
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Not on your lists |
506..1051
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LSU ribosomal protein L5p (L11e)
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=3 to=181 evalue=3.2e-78 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=3 to=181 evalue=3.2e-78)
Ribosomal protein L5 (db=superfamily db_id=SSF55282 from=1 to=180 evalue=5.4e-64 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD18_178_4
uncultured bacterium, Bacteria
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Not on your lists |
1066..1254
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30S ribosomal protein S14
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=24 to=46 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=14 to=62 evalue=4.2e-28 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=12 to=61 evalue=4.9e-25 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD18_178_5
uncultured bacterium, Bacteria
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Not on your lists |
1310..1699
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Ribosomal protein S8 n=1 Tax=Beggiatoa sp. PS RepID=A7BRH7_9GAMM (db=UNIREF evalue=2.0e-34 bit_score=147.0 identity=53.12 coverage=97.6923076923077)
30S ribosomal protein S8
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=99 to=116 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=4 to=129 evalue=6.3e-43 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD18_178_6
uncultured bacterium, Bacteria
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Not on your lists |
1734..2279
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rplF; 50S ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN19_9FIRM (db=UNIREF evalue=2.0e-44 bit_score=181.0 identity=52.51 coverage=97.2527472527473)
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=154 to=162 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=176 evalue=3.6e-94 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD18_178_7
uncultured bacterium, Bacteria
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Not on your lists |
2764..2952
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rpsE; 30S ribosomal protein S5
Ribosomal_S5 (db=HMMPfam db_id=PF00333 from=20 to=61 evalue=9.5e-15 interpro_id=IPR013810 interpro_description=Ribosomal protein S5, N-terminal GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S5 (db=HMMPanther db_id=PTHR13718:SF2 from=3 to=62 evalue=1.4e-12)
RIBOSOMAL S SUBUNIT (db=HMMPanther db_id=PTHR13718 from=3 to=62 evalue=1.4e-12 interpro_id=IPR000851 interpro_description=Ribosomal protein S5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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remove from concatenate phylogeny
kelly wrighton
(11/15/12)
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