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ACDOP11_31

Alias: ACDOP11_34992.23905.9

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACDOP11_31_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(150..617)
DNA (468bp) protein (156aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
seg (db=Seg db_id=seg from=13 to=24)
Uncharacterized protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACDOP11_31_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(698..1948)
DNA (1251bp) protein (417aa)
MacB-like periplasmic core domain containing protein
seg (db=Seg db_id=seg from=346 to=363)
seg (db=Seg db_id=seg from=75 to=99)
transmembrane_regions (db=TMHMM db_id=tmhmm from=373 to=395)
ACDOP11_31_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(1908..2120)
DNA (213bp) protein (71aa)
ABC transporter
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=1 to=61 evalue=2.7e-25)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=1 to=61 evalue=2.7e-25)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=61 evalue=3.1e-14)
ACDOP11_31_4
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(2253..2837)
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=D3EBZ3_GEOS4 (db=UNIREF evalue=3.0e-11 bit_score=71.2 identity=29.32 coverage=93.8461538461538)
hypothetical protein (db=KEGG evalue=3.0e-11 bit_score=71.2 identity=29.32 coverage=93.8461538461538)
ACDOP11_31_5
RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, WWE3, Bacteria

Not on your lists

comp(2991..3458)
DNA (468bp) protein (156aa)
GCN5-related N-acetyltransferase (db=KEGG evalue=2.0e-09 bit_score=64.3 identity=22.54 coverage=89.7435897435898)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=146 evalue=2.1e-24 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=1 to=145 evalue=1.2e-19 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acetyltransf_1 (db=HMMPfam db_id=PF00583 from=62 to=144 evalue=3.0e-13 interpro_id=IPR022610 interpro_description=GCN5-related N-acetyltransferase, C-terminal)
ACDOP11_31_6
RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, WWE3, Bacteria

Not on your lists

comp(3513..4301)
DNA (789bp) protein (263aa)
type 11 methyltransferase (db=KEGG evalue=3.0e-19 bit_score=99.0 identity=33.67 coverage=72.6235741444867)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=47 to=260 evalue=4.4e-34)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=81 to=222 evalue=2.8e-23)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=88 to=186 evalue=3.2e-18 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
ACDOP11_31_7

Not on your lists

comp(4509..4874)
DNA (366bp) protein (122aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZMH6_9FIRM (db=UNIREF evalue=1.0e-23 bit_score=112.0 identity=52.69 coverage=75.4098360655738)
seg (db=Seg db_id=seg from=107 to=119)
DUF45 (db=HMMPfam db_id=PF01863 from=12 to=105 evalue=5.4e-37 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
ACDOP11_31_8
RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, WWE3, Bacteria

Not on your lists

comp(5034..5231)
DNA (198bp) protein (66aa)
cold shock protein ScoF; K03704 cold shock protein (beta-ribbon, CspA family) (db=KEGG evalue=1.0e-09 bit_score=65.5 identity=55.56 coverage=92.4242424242424)
CSD (db=HMMPfam db_id=PF00313 from=1 to=64 evalue=1.6e-19 interpro_id=IPR002059 interpro_description=Cold-shock protein, DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=65 evalue=3.6e-15 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
Cold shock protein, CspA type (db=HMMPIR db_id=PIRSF002599 from=1 to=65 evalue=5.6e-14 interpro_id=IPR012156 interpro_description=Cold shock, CspA GO=Molecular Function: nucleic acid binding (GO:0003676))
ACDOP11_31_9
RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, RAAC2_WWE3, WWE3, Bacteria

Not on your lists

comp(5433..5693)
DNA (261bp) protein (87aa)

This feature has no annotations

ACDOP11_31_10
GWD2_WWE3_42_34, WWE3, Bacteria

Not on your lists

comp(5827..7077)
DNA (1251bp) protein (417aa)
hypothetical protein
seg (db=Seg db_id=seg from=11 to=26)
ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967:SF51 from=74 to=415 evalue=6.2e-138)
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=74 to=415 evalue=6.2e-138)
ACDOP11_31_11

Not on your lists

comp(7158..8288)
DNA (1131bp) protein (377aa)
hypothetical protein
seg (db=Seg db_id=seg from=336 to=350)
TRANSLATION FACTOR (db=HMMPanther db_id=PTHR23115 from=1 to=96 evalue=6.5e-23)
GTP-BINDING PROTEIN TYPA/BIPA (db=HMMPanther db_id=PTHR23115:SF14 from=1 to=96 evalue=6.5e-23)
ACDOP11_31_12
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(8285..8722)
DNA (438bp) protein (146aa)
ABC transporter-like protein
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=139 evalue=7.3e-62)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=2 to=139 evalue=7.3e-62)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=145 evalue=6.0e-32)
ACDOP11_31_13
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(8754..10157)
DNA (1404bp) protein (468aa)
RND family efflux transporter MFP subunit
Periplasmic component of efflux system n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5I3_9BACT (db=UNIREF evalue=1.0e-19 bit_score=101.0 identity=28.57 coverage=80.5555555555556)
seg (db=Seg db_id=seg from=95 to=111)
seg (db=Seg db_id=seg from=444 to=461)
ACDOP11_31_14
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(10209..11219)
DNA (1011bp) protein (337aa)
putative Histidine kinase (EC:2.7.13.3)
seg (db=Seg db_id=seg from=164 to=176)
seg (db=Seg db_id=seg from=59 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
ACDOP11_31_15
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(11222..11893)
DNA (672bp) protein (224aa)
two component transcriptional regulator, winged helix family protein
Two component transcriptional regulator, winged helix family n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSR3_9BACT (db=UNIREF evalue=6.0e-67 bit_score=257.0 identity=54.05 coverage=98.6607142857143)
no description (db=HMMSmart db_id=SM00448 from=1 to=112 evalue=2.4e-39 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=1 to=187 evalue=4.3e-36 interpro_id=IPR011006 interpro_description=CheY-like)
ACDOP11_31_16
ACD40, ACD40, ACD40, ACD40, Microgenomates, Bacteria

Not on your lists

comp(12334..13479)
DNA (1146bp) protein (382aa)
rimK; ribosomal protein S6 modification protein; K05844 ribosomal protein S6 modification protein (db=KEGG evalue=2.0e-12 bit_score=77.0 identity=27.65 coverage=48.9528795811518)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=124 to=356 evalue=3.3e-16)
RimK (db=HMMPfam db_id=PF08443 from=182 to=329 evalue=4.9e-13 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
ATP_GRASP (db=ProfileScan db_id=PS50975 from=148 to=353 evalue=15.947 interpro_id=IPR011761 interpro_description=ATP-grasp fold GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: ATP binding (GO:0005524))
ACDOP11_31_17
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(13618..14646)
DNA (1029bp) protein (343aa)
peptidoglycan-binding protein
seg (db=Seg db_id=seg from=142 to=153)
seg (db=Seg db_id=seg from=125 to=139)
CHITINASE (db=HMMPanther db_id=PTHR11177 from=65 to=341 evalue=4.1e-41)
ACDOP11_31_18
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(14762..15871)
DNA (1110bp) protein (370aa)
cell wall biosynthesis glycosyltransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=320 to=342)
transmembrane_regions (db=TMHMM db_id=tmhmm from=283 to=305)
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=276)
ACDOP11_31_19
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(15868..16704)
DNA (837bp) protein (279aa)
putative xylanase/chitin deacetylase
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=64 to=275 evalue=5.7e-16 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
Polysacc_deac_1 (db=HMMPfam db_id=PF01522 from=65 to=152 evalue=4.0e-08 interpro_id=IPR002509 interpro_description=Polysaccharide deacetylase GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
ACDOP11_31_20
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(16708..18141)
DNA (1434bp) protein (478aa)
seg (db=Seg db_id=seg from=3 to=21)
seg (db=Seg db_id=seg from=58 to=70)
seg (db=Seg db_id=seg from=163 to=174)
seg (db=Seg db_id=seg from=176 to=188)
ACDOP11_31_21
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(18208..19548)
DNA (1341bp) protein (447aa)
family 5 extracellular solute-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
seg (db=Seg db_id=seg from=283 to=292)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=69 to=443 evalue=1.1e-49)
ACDOP11_31_22
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(19552..19767)
DNA (216bp) protein (72aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
SecG (db=HMMPfam db_id=PF03840 from=5 to=66 evalue=7.9e-07 interpro_id=IPR004692 interpro_description=Preprotein translocase SecG subunit GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
secG: preprotein translocase, SecG subunit (db=HMMTigr db_id=TIGR00810 from=3 to=71 evalue=0.00044 interpro_id=IPR004692 interpro_description=Preprotein translocase SecG subunit GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
ACDOP11_31_23
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(19792..20193)
DNA (402bp) protein (134aa)
seg (db=Seg db_id=seg from=74 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
ACDOP11_31_24
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(20198..21511)
DNA (1314bp) protein (438aa)
Excinuclease ABC subunit C
seg (db=Seg db_id=seg from=185 to=194)
UvrC_HhH_N (db=HMMPfam db_id=PF08459 from=288 to=421 evalue=2.6e-40 interpro_id=IPR001162 interpro_description=Excinuclease ABC, C subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=19 to=102 evalue=2.0e-22 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACDOP11_31_25
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(21511..23313)
DNA (1803bp) protein (601aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=575 to=597)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=364 to=375)
seg (db=Seg db_id=seg from=572 to=582)
ACDOP11_31_26
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(23344..23943)
DNA (600bp) protein (200aa)
uvrA; excinuclease ABC, A subunit
seg (db=Seg db_id=seg from=167 to=178)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=32 to=172 evalue=7.5e-34)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=69 to=186 evalue=2.0e-17)
Displaying 26 items

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