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ACDOP11_54

Alias: ACDOP11_1783.7477.7

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACDOP11_54_1
ACD15, ACD15, ACD15, ACD15, Parcubacteria, Bacteria

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comp(2..241)
DNA (240bp) protein (80aa)
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 (db=KEGG evalue=3.0e-22 bit_score=107.0 identity=70.27 coverage=90.0)
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=1 to=78 evalue=6.1e-23 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691:SF5 from=1 to=78 evalue=6.1e-23 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal_L2_C (db=HMMPfam db_id=PF03947 from=3 to=55 evalue=4.0e-17 interpro_id=IPR022669 interpro_description=Ribosomal protein L2, C-terminal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_2
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(241..522)
DNA (282bp) protein (94aa)
rpsS; ribosomal protein S19; K02965 small subunit ribosomal protein S19 (db=KEGG evalue=4.0e-24 bit_score=113.0 identity=67.47 coverage=86.1702127659574)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=52 to=76 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=91 evalue=5.0e-48 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=92 evalue=1.8e-34 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_3
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(530..916)
DNA (387bp) protein (129aa)
ribosomal protein L22; K02890 large subunit ribosomal protein L22 (db=KEGG evalue=4.0e-18 bit_score=93.2 identity=42.99 coverage=81.3953488372093)
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=5 to=107 evalue=3.6e-30 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=1 to=109 evalue=2.6e-29 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.90.470.10 from=1 to=112 evalue=2.0e-25 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_4
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(900..1562)
DNA (663bp) protein (221aa)
SSU ribosomal protein S3P; K02982 small subunit ribosomal protein S3 (db=KEGG evalue=4.0e-49 bit_score=197.0 identity=42.27 coverage=92.7601809954751)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=175 to=209 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=220 evalue=1.6e-60 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S/40S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760 from=104 to=220 evalue=1.8e-42)
ACDOP11_54_5
Roseiflexus, Chloroflexales, Chloroflexi, Chloroflexi, Bacteria

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comp(1563..1976)
DNA (414bp) protein (138aa)
rplP; 50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 (db=KEGG evalue=4.0e-38 bit_score=159.0 identity=63.7 coverage=97.1014492753623)
50S ribosomal protein L16 n=2 Tax=Roseiflexus RepID=RL16_ROSCS (db=UNIREF evalue=8.0e-38 bit_score=159.0 identity=62.22 coverage=97.1014492753623)
seg (db=Seg db_id=seg from=5 to=19)
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=59 to=70 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_6
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(1973..2191)
DNA (219bp) protein (73aa)
RIBOSOMAL_L29 (db=PatternScan db_id=PS00579 from=42 to=56 evalue=0.0 interpro_id=IPR018254 interpro_description=Ribosomal protein L29, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=10 to=63 evalue=2.5e-07 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=1 to=65 evalue=6.2e-07 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=10 to=63 evalue=0.0016 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_7
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(2194..2493)
DNA (300bp) protein (100aa)
ribosomal protein S17; K02961 small subunit ribosomal protein S17 (db=KEGG evalue=7.0e-14 bit_score=79.3 identity=53.42 coverage=71.0)
Ribosomal_S17 (db=HMMPfam db_id=PF00366 from=6 to=73 evalue=8.5e-20 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=77 evalue=2.5e-19 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=74 evalue=5.3e-19 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACDOP11_54_8
Marinitoga piezophila, Marinitoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

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comp(2490..2855)
DNA (366bp) protein (122aa)
ribosomal protein L14; K02874 large subunit ribosomal protein L14 (db=KEGG evalue=1.0e-30 bit_score=134.0 identity=57.38 coverage=98.3606557377049)
50S ribosomal protein L14 n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5W5_THEAS (db=UNIREF evalue=1.0e-30 bit_score=134.0 identity=57.38 coverage=98.3606557377049)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=121 evalue=3.7e-51 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S RIBOSOMAL PROTEIN L14 (db=HMMPanther db_id=PTHR11761:SF3 from=1 to=121 evalue=2.5e-45 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACDOP11_54_9
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(2856..3200)
DNA (345bp) protein (115aa)
ribosomal protein L24; K02895 large subunit ribosomal protein L24 (db=KEGG evalue=5.0e-14 bit_score=79.7 identity=46.59 coverage=73.0434782608696)
seg (db=Seg db_id=seg from=5 to=24)
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=7 to=24 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=104 evalue=3.3e-32 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_10
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(3204..3749)
DNA (546bp) protein (182aa)
rplE; ribosomal protein L5; K02931 large subunit ribosomal protein L5 (db=KEGG evalue=1.0e-43 bit_score=178.0 identity=49.44 coverage=98.3516483516484)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=163 to=174)
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=3 to=181 evalue=8.3e-73 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_11
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(3942..4325)
DNA (384bp) protein (128aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 (db=KEGG evalue=2.0e-18 bit_score=94.4 identity=40.83 coverage=92.1875)
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=8 to=126 evalue=5.0e-30 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=5 to=126 evalue=6.7e-26 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=3 to=127 evalue=6.2e-18 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_12
Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4327..4875)
DNA (549bp) protein (183aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 (db=KEGG evalue=3.0e-41 bit_score=171.0 identity=52.1 coverage=90.1639344262295)
50S ribosomal protein L6 n=66 Tax=Staphylococcus RepID=RL6_STAA1 (db=UNIREF evalue=3.0e-41 bit_score=171.0 identity=52.1 coverage=90.1639344262295)
seg (db=Seg db_id=seg from=168 to=182)
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=153 to=161 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_13
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(4881..5228)
DNA (348bp) protein (116aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 (db=KEGG evalue=1.0e-21 bit_score=105.0 identity=55.1 coverage=83.6206896551724)
seg (db=Seg db_id=seg from=3 to=17)
seg (db=Seg db_id=seg from=75 to=84)
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=3 to=115 evalue=1.0e-37 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_54_14
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(5319..5696)
DNA (378bp) protein (126aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 (db=KEGG evalue=8.0e-24 bit_score=112.0 identity=54.92 coverage=96.031746031746)
seg (db=Seg db_id=seg from=68 to=80)
RIBOSOMAL S SUBUNIT (db=HMMPanther db_id=PTHR13718 from=1 to=122 evalue=2.1e-39 interpro_id=IPR000851 interpro_description=Ribosomal protein S5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S5 (db=HMMPanther db_id=PTHR13718:SF2 from=1 to=122 evalue=2.1e-39)
ACDOP11_54_15
ACD13, ACD13, ACD13, ACD13, Microgenomates, Bacteria

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comp(5701..6138)
DNA (438bp) protein (146aa)
seg (db=Seg db_id=seg from=10 to=34)
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=112 to=141 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal proteins L15p and L18e (db=superfamily db_id=SSF52080 from=8 to=145 evalue=5.4e-18 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
Ribosomal_L18e (db=HMMPfam db_id=PF00828 from=23 to=144 evalue=4.0e-12 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
ACDOP11_54_16
GWC2_OP11_47_16, Woesebacteria, Microgenomates, Bacteria

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comp(6138..7445)
DNA (1308bp) protein (436aa)
preprotein translocase, SecY subunit; K03076 preprotein translocase subunit SecY (db=KEGG evalue=5.0e-92 bit_score=341.0 identity=48.57 coverage=94.0366972477064)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=308 to=330)
transmembrane_regions (db=TMHMM db_id=tmhmm from=358 to=380)
Displaying 16 items

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