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ACDOP11_56

Alias: ACDOP11_9974.7132.26

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACDOP11_56_1
RAAC19, RAAC19, RAAC19, RAAC19, Microgenomates, Bacteria

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comp(1..234)
DNA (234bp) protein (78aa)
fusA; elongation factor G; K02355 elongation factor EF-G [EC:3.6.5.3] (db=KEGG evalue=8.0e-19 bit_score=95.9 identity=58.11 coverage=93.5897435897436)
no description (db=HMMSmart db_id=SM00838 from=1 to=72 evalue=3.2e-23 interpro_id=IPR000640 interpro_description=Translation elongation factor EFG/EF2, C-terminal GO=Molecular Function: GTP binding (GO:0005525))
EFG_C (db=HMMPfam db_id=PF00679 from=1 to=71 evalue=2.0e-20 interpro_id=IPR000640 interpro_description=Translation elongation factor EFG/EF2, C-terminal GO=Molecular Function: GTP binding (GO:0005525))
EF-G C-terminal domain-like (db=superfamily db_id=SSF54980 from=2 to=75 evalue=1.3e-15 interpro_id=IPR009022 interpro_description=Elongation factor G/III/V)
ACDOP11_56_2

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comp(1625..1936)
DNA (312bp) protein (104aa)
SSU ribosomal protein S10P; K02946 small subunit ribosomal protein S10 (db=KEGG evalue=7.0e-30 bit_score=132.0 identity=59.18 coverage=93.2692307692308)
30S ribosomal protein S10 n=3 Tax=Oenococcus oeni RepID=RS10_OENOB (db=UNIREF evalue=7.0e-30 bit_score=132.0 identity=59.18 coverage=93.2692307692308)
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=30 to=45 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=5 to=103 evalue=4.0e-52 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACDOP11_56_3

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comp(2669..3286)
DNA (618bp) protein (206aa)
50S ribosomal protein L4 n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D6V0_9RHOB (db=UNIREF evalue=6.0e-17 bit_score=90.5 identity=37.89 coverage=89.3203883495146)
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 (db=KEGG evalue=6.0e-17 bit_score=90.5 identity=37.7 coverage=89.3203883495146)
seg (db=Seg db_id=seg from=76 to=84)
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=2 to=196 evalue=5.2e-41 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_56_4
RAAC19, RAAC19, RAAC19, RAAC19, Microgenomates, Bacteria

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comp(3289..3597)
DNA (309bp) protein (103aa)
ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 (db=KEGG evalue=2.0e-14 bit_score=80.9 identity=41.11 coverage=86.4077669902913)
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=7 to=98 evalue=1.7e-18 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=7 to=101 evalue=4.2e-18 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=10 to=98 evalue=6.3e-17 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_56_5
RAAC19, RAAC19, RAAC19, RAAC19, Microgenomates, Bacteria

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comp(3603..4361)
DNA (759bp) protein (253aa)
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 (db=KEGG evalue=2.0e-74 bit_score=281.0 identity=57.14 coverage=93.2806324110672)
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=1 to=251 evalue=2.1e-114 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal protein, L2p/L2a/L8e/organellar L2 types (db=HMMPIR db_id=PIRSF002158 from=1 to=249 evalue=8.5e-86 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=68 to=249 evalue=1.2e-80 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_56_6
RAAC19, RAAC19, RAAC19, RAAC19, Microgenomates, Bacteria

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comp(4364..4648)
DNA (285bp) protein (95aa)
ribosomal protein S19; K02965 small subunit ribosomal protein S19 (db=KEGG evalue=2.0e-29 bit_score=130.0 identity=75.0 coverage=87.3684210526316)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=89 evalue=3.2e-46 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=89 evalue=4.6e-38 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_56_7
RAAC19, RAAC19, RAAC19, RAAC19, Microgenomates, Bacteria

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comp(4655..5128)
DNA (474bp) protein (158aa)
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 (db=KEGG evalue=4.0e-11 bit_score=70.1 identity=38.14 coverage=72.7848101265823)
seg (db=Seg db_id=seg from=126 to=157)
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=15 to=117 evalue=3.1e-21 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=11 to=118 evalue=6.8e-21 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACDOP11_56_8
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5130..5783)
DNA (654bp) protein (218aa)
ribosomal protein S3; K02982 small subunit ribosomal protein S3 (db=KEGG evalue=5.0e-46 bit_score=187.0 identity=46.76 coverage=95.4128440366973)
seg (db=Seg db_id=seg from=84 to=100)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=171 to=205 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=216 evalue=2.5e-70 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACDOP11_56_9
RAAC19, RAAC19, RAAC19, RAAC19, Microgenomates, Bacteria

Not on your lists

comp(5966..6466)
DNA (501bp) protein (167aa)
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 (db=KEGG evalue=3.0e-10 bit_score=67.4 identity=37.6 coverage=70.059880239521)
seg (db=Seg db_id=seg from=133 to=166)
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=11 to=118 evalue=6.8e-21 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=15 to=117 evalue=7.5e-21 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 9 items

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