ggKbase home page

GWF1_Sphingobium_63_6_gwf1_scaffold_1762

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_1
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..542
DNA (540bp) protein (180aa)
peroxiredoxin (EC:1.11.1.15); K00432 glutathione peroxidase [EC:1.11.1.9] Tax=GWF1_Sphingomonadales_63_6_curated
peroxiredoxin (EC:1.11.1.15)
glutathione peroxidase n=1 Tax=Sphingobium xenophagum RepID=UPI00031CCD1F
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_2
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

648..1805
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MNT7_9SPHN
peptidase M20 Tax=GWF1_Sphingomonadales_63_6_curated
peptidase M20
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_3
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2052..2981
DNA (930bp) protein (310aa)
hemB; porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] Tax=GWF1_Sphingomonadales_63_6_curated
hemB; porphobilinogen synthase (EC:4.2.1.24)
UPI0003D605D6 related cluster n=1 Tax=unknown RepID=UPI0003D605D6
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_4
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2947..3558
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000369F316
putative acetyltransferase Tax=GWF1_Sphingomonadales_63_6_curated
putative acetyltransferase
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_5
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4055..4675)
DNA (621bp) protein (207aa)
eda; 2-dehydro-3-deoxyphosphogluconate aldolase (EC:4.1.2.14); K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] Tax=GWF1_Sphingomonadales_63
eda; 2-dehydro-3-deoxyphosphogluconate aldolase (EC:4.1.2.14)
4-Hydroxy-2-oxoglutarate aldolase / 2-dehydro-3-deoxyphosphogluconate aldolase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MPX5_9SPHN
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_6
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4672..5652)
DNA (981bp) protein (327aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2] Tax=GWF1_Sphingomonadales_63_6_curated
glucokinase (EC:2.7.1.2)
Glucokinase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTL2_9SPHN
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_7
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5769..6434)
DNA (666bp) protein (222aa)
edd; phosphogluconate dehydratase (EC:4.2.1.12); K01690 phosphogluconate dehydratase [EC:4.2.1.12] Tax=GWF1_Sphingomonadales_63_6_curated
edd; phosphogluconate dehydratase (EC:4.2.1.12)
phosphogluconate dehydratase n=1 Tax=Sphingobium xenophagum RepID=UPI000362EB99
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_8
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6787..6921
DNA (135bp) protein (45aa)
Tax=GWF1_Sphingomonadales_63_6_curated
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_9
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7069..7332
DNA (264bp) protein (88aa)
Tax=GWF1_Sphingomonadales_63_6_curated
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_10
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7366..9051)
DNA (1686bp) protein (562aa)
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=GWF1_Sphingomonadales_63_6_curated
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQH5_9SPHN
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_trna_1
unknown

Not on your lists

9258..9339
DNA (82bp)
transferRNA
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_trna_2
unknown

Not on your lists

comp(9630..9702)
DNA (73bp)
transferRNA
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_11
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9849..10511)
DNA (663bp) protein (221aa)
Rod shape-determining protein RodA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MIC3_9SPHN
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=GWF1_Sphingomonadales_63_6_curated
rod shape-determining protein RodA
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_12
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10570..10923)
DNA (354bp) protein (118aa)
Rod shape-determining protein RodA n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MIC3_9SPHN
rodA; rod shape determining protein; K05837 rod shape determining protein RodA Tax=GWF1_Sphingomonadales_63_6_curated
rodA; rod shape determining protein
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_13
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10920..12959)
DNA (2040bp) protein (680aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=GWF1_Sphingomonadales_63_6_curated
penicillin-binding protein 2 (EC:2.4.1.129) rbh
Penicillin-binding protein 2 (PBP-2) n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM16_9SPHN
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_14
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12956..13483)
DNA (528bp) protein (176aa)
Rod shape-determining protein MreD n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IWI1_9SPHN
hypothetical protein; K03571 rod shape-determining protein MreD Tax=GWF1_Sphingomonadales_63_6_curated
hypothetical protein
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_15
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13480..14397)
DNA (918bp) protein (306aa)
UPI0003D67DDE related cluster n=1 Tax=unknown RepID=UPI0003D67DDE
Rod shape-determining protein MreC {ECO:0000313|EMBL:EXS71112.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphi
mreC; rod shape-determining protein MreC
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_16
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14429..14989)
DNA (561bp) protein (187aa)
Rod shape-determining protein MreB n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MND9_9SPHN
mreB; rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=GWF1_Sphingomonadales_63_6_curated
MreB/Mrl family cell shape determining protein
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_17
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15007..15468)
DNA (462bp) protein (154aa)
rod shape-determining protein MreB n=1 Tax=Sphingobium xenophagum RepID=UPI00031C9F1A
Rod shape-determining protein MreB {ECO:0000313|EMBL:EXS71113.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphi
mreB; rod shape-determining protein MreB
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_18
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15629..17413
DNA (1785bp) protein (595aa)
DNA mismatch repair protein MutL n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MS48_9SPHN
mutL; DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL Tax=GWF1_Sphingomonadales_63_6_curated
mutL; DNA mismatch repair protein MutL
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_19
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17435..17899)
DNA (465bp) protein (155aa)
UPI0003D61245 related cluster n=1 Tax=unknown RepID=UPI0003D61245
MaoC-like dehydratase Tax=GWF1_Sphingomonadales_63_6_curated
MaoC-like dehydratase
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_20
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17960..19510)
DNA (1551bp) protein (517aa)
putative phosphodiesterase/alkaline phosphatase; K01113 alkaline phosphatase D [EC:3.1.3.1] Tax=GWF1_Sphingomonadales_63_6_curated
alkaline phosphatase n=1 Tax=Sphingobium xenophagum RepID=UPI0002F44992
putative phosphodiesterase/alkaline phosphatase
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_21
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19532..20806)
DNA (1275bp) protein (425aa)
phosphodiesterase I (EC:3.1.4.1) Tax=GWF1_Sphingomonadales_63_6_curated
phosphodiesterase I (EC:3.1.4.1)
Phosphodiesterase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HH62_9SPHN
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_22
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20875..21408)
DNA (534bp) protein (178aa)
UPI0003D657EC related cluster n=1 Tax=unknown RepID=UPI0003D657EC
putative G:T/U mismatch-specific DNA glycosylase Tax=GWF1_Sphingomonadales_63_6_curated
putative G:T/U mismatch-specific DNA glycosylase
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_23
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21412..22512)
DNA (1101bp) protein (367aa)
GTP-binding protein YchF n=1 Tax=Sphingobium xenophagum RepID=UPI0002F0D541
GTP-binding protein YchF; K06942 Tax=GWF1_Sphingomonadales_63_6_curated
GTP-binding protein YchF
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_24
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22645..23094
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IZZ4_9SPHN
hypothetical protein Tax=GWF1_Sphingomonadales_63_6_curated
hypothetical protein
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_25
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23104..24519)
DNA (1416bp) protein (472aa)
Transcriptional regulator, XRE family n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EZU9_SPHCR
XRE family transcriptional regulator; K07110 Tax=GWF1_Sphingomonadales_63_6_curated
XRE family transcriptional regulator
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_26
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24799..26331
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase (EC:6.4.1.3); K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] Tax=GWF1_Sphingomonadales_63_6_curated
propionyl-CoA carboxylase (EC:6.4.1.3)
methylmalonyl-CoA carboxyltransferase n=1 Tax=Sphingobium xenophagum RepID=UPI00036C9598
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_27
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26446..26883
DNA (438bp) protein (146aa)
methylmalonyl-CoA epimerase (EC:5.1.99.1); K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=GWF1_Sphingomonadales_63_6_curated
methylmalonyl-CoA epimerase (EC:5.1.99.1)
methylmalonyl-CoA epimerase n=1 Tax=Sphingobium xenophagum RepID=UPI00037B3D1B
GWF1_Sphingobium_63_6_gwf1_scaffold_1762_28
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27066..27182
DNA (117bp) protein (39aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2 5.4.99.4); K01847 methylmalonyl-CoA mutase [EC:5.4.99.2] Tax=GWF1_Sphingomonadales_63_6_curated
bhbA; Methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MVX2_9SPHN
Displaying 30 items

View Taxonomy