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GWF2_RBX1_38_17_gwf2_scaffold_4066

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_RBX1_38_17_gwf2_scaffold_4066_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(58..252)
DNA (195bp) protein (65aa)
id=2172706 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2172706 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4066_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(481..1251)
DNA (771bp) protein (257aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase id=2172705 bin=GWE2_RBX1_39_32 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K08590 carbon-nitrogen hydrolase family protein Tax=GWF2_RBX1_38_17_curated
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
GWF2_RBX1_38_17_gwf2_scaffold_4066_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(1248..1925)
DNA (678bp) protein (226aa)
phage SPO1 DNA polymerase-related protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=GWF2_RBX1_38_17_curated
UPI00020A971C related cluster id=2020821 bin=GWD2_RBX1-related_39_127 species=Thermodesulfobium narugense genus=Thermodesulfobium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
phage SPO1 DNA polymerase-related protein
GWF2_RBX1_38_17_gwf2_scaffold_4066_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(1922..2566)
DNA (645bp) protein (215aa)
thymidylate kinase (EC:2.7.4.9) Tax=GWF2_RBX1_38_17_curated
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase id=2172703 bin=GWE2_RBX1_39_32 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_4066_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(2518..3306)
DNA (789bp) protein (263aa)
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] Tax=GWF2_RBX1_38_17_curated
tmk; putative thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase id=2172701 bin=GWE2_RBX1_39_32 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_4066_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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3555..4262
DNA (708bp) protein (236aa)
ATP synthase F0, subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase subunit a id=2172699 bin=GWE2_RBX1_39_32 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ATP synthase F0 subunit A
GWF2_RBX1_38_17_gwf2_scaffold_4066_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

4279..4512
DNA (234bp) protein (78aa)
ATP synthase F0 subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase F0, C subunit id=2172697 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ATP synthase F0 subunit C
GWF2_RBX1_38_17_gwf2_scaffold_4066_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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4528..5028
DNA (501bp) protein (167aa)
atpF; ATP synthase F0 subunit B (EC:3.6.3.14); K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
atpF; ATP synthase F0 subunit B (EC:3.6.3.14)
ATP synthase subunit b id=4157997 bin=GWF2_OP9-related_38_17 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
GWF2_RBX1_38_17_gwf2_scaffold_4066_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

5012..5551
DNA (540bp) protein (180aa)
ATP synthase F1 subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase subunit 5 id=2172693 bin=GWE2_RBX1_39_32 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
atpH; ATP synthase subunit delta, sodium ion specific
GWF2_RBX1_38_17_gwf2_scaffold_4066_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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5567..7126
DNA (1560bp) protein (520aa)
atpA; ATP synthase F1 complex subunit alpha (EC:3.6.3.14) Tax=GWF2_RBX1_38_17_curated
atpA; ATP synthase F1 complex subunit alpha (EC:3.6.3.14)
ATP synthase F1 complex subunit alpha id=2172691 bin=GWE2_RBX1_39_32 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_4066_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

7126..8019
DNA (894bp) protein (298aa)
atpG; ATP synthase F1, gamma subunit (EC:3.6.3.14) Tax=GWF2_RBX1_38_17_curated
atpG; ATP synthase F1, gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain, sodium ion specific id=2172689 bin=GWE2_RBX1_39_32 species=Propionigenium modestum genus=Propionigenium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWF2_RBX1_38_17_gwf2_scaffold_4066_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

8025..9443
DNA (1419bp) protein (473aa)
F0F1 ATP synthase subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase subunit beta id=1810647 bin=GWD2_RBX1-related_39_127 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
ATP synthase subunit beta
GWF2_RBX1_38_17_gwf2_scaffold_4066_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

9440..9694
DNA (255bp) protein (85aa)
id=2172661 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2172661 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4066_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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9861..10139
DNA (279bp) protein (93aa)
id=2172660 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2172660 Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4066_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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10219..10680
DNA (462bp) protein (154aa)
Uncharacterized protein id=2172658 bin=GWE2_RBX1_39_32 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_4066_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

10741..12189
DNA (1449bp) protein (483aa)
Na+/H+ antiporter id=1810643 bin=GWD2_RBX1-related_39_127 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
potassium/proton antiporter; K11105 cell volume regulation protein A Tax=GWF2_RBX1_38_17_curated
potassium/proton antiporter
GWF2_RBX1_38_17_gwf2_scaffold_4066_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(12324..12680)
DNA (357bp) protein (119aa)
Response regulator/phosphatase id=2172654 bin=GWE2_RBX1_39_32 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY Tax=GWF2_RBX1_38_17_curated
response regulator receiver protein
GWF2_RBX1_38_17_gwf2_scaffold_4066_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

12796..13026
DNA (231bp) protein (77aa)
Helix-turn-helix domain-containing protein id=2172652 bin=GWE2_RBX1_39_32 species=Zunongwangia profunda genus=Zunongwangia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Helix-turn-helix domain-containing protein Tax=GWF2_RBX1_38_17_curated
GWF2_RBX1_38_17_gwf2_scaffold_4066_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(13044..13478)
DNA (435bp) protein (145aa)
Transcriptional regulatory protein id=2172650 bin=GWE2_RBX1_39_32 species=Clostridium tetani genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
transcriptional regulatory protein; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=GWF2_RBX1_38_17_curated
transcriptional regulatory protein
GWF2_RBX1_38_17_gwf2_scaffold_4066_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

13614..13943
DNA (330bp) protein (110aa)
Regulatory protein ArsR id=1810639 bin=GWD2_RBX1-related_39_127 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator Tax=GWF2_RBX1_38_17_curated
ArsR family transcriptional regulator
GWF2_RBX1_38_17_gwf2_scaffold_4066_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

13961..14611
DNA (651bp) protein (217aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein id=2172646 bin=GWE2_RBX1_39_32 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
4Fe-4S ferredoxin Tax=GWF2_RBX1_38_17_curated
4Fe-4S ferredoxin
GWF2_RBX1_38_17_gwf2_scaffold_4066_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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14630..14962
DNA (333bp) protein (111aa)
Putative uncharacterized protein id=2172644 bin=GWE2_RBX1_39_32 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWF2_RBX1_38_17_gwf2_scaffold_4066_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

14984..16108
DNA (1125bp) protein (375aa)
Cysteine desulfurase id=2172642 bin=GWE2_RBX1_39_32 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
cysteine desulfurase family protein Tax=GWF2_RBX1_38_17_curated
cysteine desulfurase family protein
Displaying 23 items

View Taxonomy