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RBG_16_DPX2_64_85_RBG_16_scaffold_10138

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..117)
DNA (117bp) protein (39aa)
Tax=RBG_16_Deltaproteobacteria_64_85_curated
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

336..1394
DNA (1059bp) protein (353aa)
response regulator receiver modulated metal dependent phosphohydrolase; K07814 putative two-component system response regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=4763461 bin=GWC2_Proteo_65_14_Ab886 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
response regulator receiver modulated metal dependent phosphohydrolase
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1494..4040
DNA (2547bp) protein (849aa)
alpha-glucan phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Alpha-glucan phosphorylase id=3516232 bin=GWC2_Proteo_65_14_Ab886 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
alpha-glucan phosphorylase
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4056..5309)
DNA (1254bp) protein (418aa)
major facilitator superfamily transporter; K08177 MFS transporter, OFA family, oxalate/formate antiporter Tax=RBG_16_Deltaproteobacteria_64_85_curated
MFS transporter id=3516231 bin=GWC2_Proteo_65_14_Ab886 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
major facilitator superfamily transporter
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5291..5995)
DNA (705bp) protein (235aa)
family 2 glycosyl transferase Tax=RBG_16_Deltaproteobacteria_64_85_curated
family 2 glycosyl transferase id=14624661 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
glycosyltransferase like 2 family protein
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6003..6719)
DNA (717bp) protein (239aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=14624662 bin=bin5_DeltaP species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6824..7558
DNA (735bp) protein (245aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=14624663 bin=bin5_DeltaP species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7650..9092
DNA (1443bp) protein (481aa)
integral membrane sensor signal transduction histidine kinase Tax=RBG_16_Deltaproteobacteria_64_85_curated
Periplasmic sensor signal transduction histidine kinase id=3516228 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
integral membrane sensor signal transduction histidine kinase
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9097..10470
DNA (1374bp) protein (458aa)
sigma-54 dependent DNA-binding response regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
Sigma-54-dependent transcriptional response regulator id=3516227 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
sigma-54-dependent transcriptional response regulator
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10648..11199
DNA (552bp) protein (184aa)
histone H1-like protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=14624666 bin=bin5_DeltaP species=Burkholderia sp. WSM4176 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
histone H1-like nucleoHC2 family protein
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11433..12563
DNA (1131bp) protein (377aa)
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Phosphoserine aminotransferase id=4333231 bin=GWA2_Deltaproteo_65_63 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
phosphoserine aminotransferase
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12592..14166
DNA (1575bp) protein (525aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Phosphoglycerate dehydrogenase and related dehydrogenase id=3516223 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
D-3-phosphoglycerate dehydrogenase
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14183..15478
DNA (1296bp) protein (432aa)
purA; adenylosuccinate synthetase; K01939 adenylosuccinate synthase [EC:6.3.4.4] Tax=RBG_16_Deltaproteobacteria_64_85_curated
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase id=3414053 bin=GWC2_Deltaproteobacteria_66_88 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_trna_1
unknown

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15519..15591
DNA (73bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_trna_2
unknown

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15609..15683
DNA (75bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_14
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15849..16091
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5CYD8_PELTS
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_15
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16081..16527
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000379BABF
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_16
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17198..17674
DNA (477bp) protein (159aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=14623452 bin=bin5_DeltaP species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_17
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17671..18060
DNA (390bp) protein (130aa)
type IV fimbrial biogenesis transmembrane pile-like protein; K02655 type IV pilus assembly protein PilE Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative TYPE 4 fimbrial BIOGENESIS TRANSMEMBRANE pilE-related PROTEIN id=2939783 bin=GWC2_Deltaproteobacteria_66_88 species=Leptolyngbya sp. PCC 7376 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
type IV fimbrial biogenesis transmembrane pile-like protein
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_18
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18554..20371
DNA (1818bp) protein (606aa)
4Fe-4S ferredoxin, iron-sulfur binding Tax=RBG_16_Deltaproteobacteria_64_85_curated
4Fe-4S ferredoxin, iron-sulfur binding protein id=3516219 bin=GWC2_Proteo_65_14_Ab886 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
4Fe-4S ferredoxin, iron-sulfur binding
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_19
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20398..20742
DNA (345bp) protein (115aa)
class III cytochrome c Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=14624678 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
class III cytochrome c
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_20
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20885..22264
DNA (1380bp) protein (460aa)
ResB family protein; K07399 cytochrome c biogenesis protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
ResB-like id=3516215 bin=GWC2_Proteo_65_14_Ab886 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
cytochrome C biogenesis protein ResB
RBG_16_DPX2_64_85_RBG_16_scaffold_10138_21
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22316..22591
DNA (276bp) protein (92aa)
cytochrome C-type biogenesis protein CcsB Tax=RBG_16_Deltaproteobacteria_64_85_curated
cytochrome c-type biogenesis protein CcsB id=14624680 bin=bin5_DeltaP species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
cytochrome C-type biogenesis protein CcsB
Displaying 23 items

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