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RBG_16_DPX2_64_85_RBG_16_scaffold_3193

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3..98
DNA (96bp) protein (32aa)
Tax=RBG_16_Deltaproteobacteria_64_85_curated
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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122..271
DNA (150bp) protein (50aa)
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RBG_16_Deltaproteobacteria_64_85_curated
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 id=14625025 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
rpmG; 50S ribosomal protein L33
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_trna_1
unknown

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285..358
DNA (74bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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450..674
DNA (225bp) protein (75aa)
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RBG_16_Deltaproteobacteria_64_85_curated
Preprotein translocase, SecE subunit id=4589879 bin=GWC2_Proteo_65_14_Ab886 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
preprotein translocase subunit SecE
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

694..1221
DNA (528bp) protein (176aa)
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG Tax=RBG_16_Deltaproteobacteria_64_85_curated
transcription antitermination protein nusG id=14625027 bin=bin5_DeltaP species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
antitermination protein NusG
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1243..1665
DNA (423bp) protein (141aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RBG_16_Deltaproteobacteria_64_85_curated
50S ribosomal protein L11 id=4589884 bin=GWC2_Proteo_65_14_Ab886 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
50S ribosomal protein L11
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1703..2407
DNA (705bp) protein (235aa)
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RBG_16_Deltaproteobacteria_64_85_curated
50S ribosomal protein L1 id=1788698 bin=GWB2_Deltaproteobacteria_65_81 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L1
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2601..3134
DNA (534bp) protein (178aa)
rplJ; LSU ribosomal protein L10p (P0) Tax=RBG_16_Deltaproteobacteria_64_85_curated
rplJ; LSU ribosomal protein L10p (P0) id=14625030 bin=bin5_DeltaP species=unknown genus=Dehalobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
rplJ; LSU ribosomal protein L10p (P0)
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3148..3525
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RBG_16_Deltaproteobacteria_64_85_curated
50S ribosomal protein L7/L12 id=4767552 bin=GWC2_Deltaproteobacteria_66_88 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
50S ribosomal protein L7/L12
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3612..7721
DNA (4110bp) protein (1370aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RBG_16_Deltaproteobacteria_64_85_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] id=14625032 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7758..11891
DNA (4134bp) protein (1378aa)
rpoC; DNA-directed RNA polymerase, beta-prime subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RBG_16_Deltaproteobacteria_64_85_curated
rpoC; DNA-directed RNA polymerase, beta-prime subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=14625033 bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
rpoC; DNA-directed RNA polymerase subunit beta'
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11972..12343
DNA (372bp) protein (124aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RBG_16_Deltaproteobacteria_64_85_curated
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=14625034 bin=bin5_DeltaP species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
30S ribosomal protein S12
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12503..12973
DNA (471bp) protein (157aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RBG_16_Deltaproteobacteria_64_85_curated
30S ribosomal protein S7 id=4767548 bin=GWC2_Deltaproteobacteria_66_88 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
30S ribosomal protein S7
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13005..15086
DNA (2082bp) protein (694aa)
elongation factor G; K02355 elongation factor G Tax=RBG_16_Deltaproteobacteria_64_85_curated
Elongation factor G id=1788714 bin=GWB2_Deltaproteobacteria_65_81 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
elongation factor G
RBG_16_DPX2_64_85_RBG_16_scaffold_3193_14
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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15116..15205
DNA (90bp) protein (30aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu (Fragment) id=1788716 bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
translation elongation factor Tu; K02358 elongation factor Tu Tax=GWA2_Deltaproteobacteria_65_63_curated
Displaying 15 items

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