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RBG_16_DPX2_64_85_RBG_16_scaffold_110

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Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_110_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..93)
DNA (93bp) protein (31aa)
tuf; elongation factor Tu (EC:3.6.5.3) Tax=RBG_16_Deltaproteobacteria_64_85_curated
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu id=4976228 bin=GWA2_Deltaproteo_65_63 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_trna_4
unknown

Not on your lists

comp(136..208)
DNA (73bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_110_trna_3
unknown

Not on your lists

comp(232..304)
DNA (73bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_110_trna_2
unknown

Not on your lists

comp(431..512)
DNA (82bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_110_trna_1
unknown

Not on your lists

comp(528..599)
DNA (72bp)
transferRNA
RBG_16_DPX2_64_85_RBG_16_scaffold_110_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(971..1693)
DNA (723bp) protein (241aa)
SpoU rRNA methylase family protein; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RBG_16_Deltaproteobacteria_64_85_curated
rRNA methylase, putative, group 3 id=14623297 bin=bin5_DeltaP species=Dyella japonica genus=Dyella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
SpoU rRNA methylase
RBG_16_DPX2_64_85_RBG_16_scaffold_110_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1719..2411)
DNA (693bp) protein (231aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RBG_16_Deltaproteobacteria_64_85_curated
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] id=14623298 bin=bin5_DeltaP species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
RBG_16_DPX2_64_85_RBG_16_scaffold_110_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2408..4141)
DNA (1734bp) protein (578aa)
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=RBG_16_Deltaproteobacteria_64_85_curated
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase id=3411077 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4138..5214)
DNA (1077bp) protein (359aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RBG_16_Deltaproteobacteria_64_85_curated
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] id=14623300 bin=bin5_DeltaP species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
RBG_16_DPX2_64_85_RBG_16_scaffold_110_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5258..6241)
DNA (984bp) protein (328aa)
id=14623301 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=14623301 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6238..9630)
DNA (3393bp) protein (1131aa)
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; K02674 type IV pilus assembly protein PilY1 Tax=RBG_16_Deltaproteobacteria_64_85_curated
PilC domain-containing protein; K02674 type IV pilus assembly protein PilY1 id=14623302 bin=bin5_DeltaP species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein
RBG_16_DPX2_64_85_RBG_16_scaffold_110_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9658..10089)
DNA (432bp) protein (144aa)
id=14623303 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=14623303 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10104..11093)
DNA (990bp) protein (330aa)
pilW-1; type IV pilus assembly protein PilW; K02672 type IV pilus assembly protein PilW Tax=RBG_16_Deltaproteobacteria_64_85_curated
pilW-1; type IV pilus assembly protein PilW; K02672 type IV pilus assembly protein PilW id=14623304 bin=bin5_DeltaP species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
pilW-1; type IV pilus minor pilin PilW
RBG_16_DPX2_64_85_RBG_16_scaffold_110_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11096..11548)
DNA (453bp) protein (151aa)
type 4 fimbrial biogenesis protein PilV; K02671 type IV pilus assembly protein PilV Tax=RBG_16_Deltaproteobacteria_64_85_curated
PilV; K02671 type IV pilus assembly protein PilV id=14623305 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin5_DeltaP organism_group=Deltaproteobacteria
type 4 fimbrial biogenesis protein PilV
RBG_16_DPX2_64_85_RBG_16_scaffold_110_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11535..12041)
DNA (507bp) protein (169aa)
Tfp pilus assembly protein FimT-like protein; K08084 type IV fimbrial biogenesis protein FimT Tax=RBG_16_Deltaproteobacteria_64_85_curated
Tfp pilus assembly protein FimT-like protein; K08084 type IV fimbrial biogenesis protein FimT id=14623306 bin=bin5_DeltaP tax=bin5_DeltaP organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12178..12978)
DNA (801bp) protein (267aa)
Silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-] id=14623307 bin=bin5_DeltaP species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
Silent information regulator protein Sir2
RBG_16_DPX2_64_85_RBG_16_scaffold_110_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12975..13298)
DNA (324bp) protein (108aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
sterol carrier protein id=14623308 bin=bin5_DeltaP species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_110_14
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13403..14005
DNA (603bp) protein (201aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RBG_16_Deltaproteobacteria_64_85_curated
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase id=4957089 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_15
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14076..15182)
DNA (1107bp) protein (369aa)
alanine dehydrogenase (EC:1.4.1.1); K00259 alanine dehydrogenase [EC:1.4.1.1] Tax=RBG_16_Deltaproteobacteria_64_85_curated
ald; alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1] id=14623310 bin=bin5_DeltaP species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=bin5_DeltaP organism_group=Deltaproteobacteria
alanine dehydrogenase
RBG_16_DPX2_64_85_RBG_16_scaffold_110_16
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15189..17213)
DNA (2025bp) protein (675aa)
CoA-binding domain-containing protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
CoA-binding domain-containing protein id=14623311 bin=bin5_DeltaP species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
CoA-binding domain-containing protein
RBG_16_DPX2_64_85_RBG_16_scaffold_110_17
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17346..17549)
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RBG_16_Deltaproteobacteria_64_85_curated
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) id=14623312 bin=bin5_DeltaP species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
cold-shock DNA-binding protein family protein
RBG_16_DPX2_64_85_RBG_16_scaffold_110_18
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17744..17983)
DNA (240bp) protein (80aa)
id=3399205 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=3399205 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_19
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18231..18383)
DNA (153bp) protein (51aa)
id=3399204 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=3399204 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_20
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18644..21325
DNA (2682bp) protein (894aa)
acyl-CoA synthetase/AMP-acid ligase (EC:1.3.1.84 6.2.1.36 4.2.1.116) Tax=RBG_16_Deltaproteobacteria_64_85_curated
acyl-CoA synthetase/AMP-acid ligase (EC:1.3.1.84 6.2.1.36 4.2.1.116)
Enoyl-CoA hydratase id=4311828 bin=GWA2_Deltaproteo_65_63 species=unknown genus=Natronococcus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_21
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21322..26328
DNA (5007bp) protein (1669aa)
sdr3; glucose/ribitol dehydrogenase family protein (EC:1.1.1.-) Tax=RBG_16_Deltaproteobacteria_64_85_curated
sdr-1; glucose/ribitol dehydrogenase family protein (EC:1.1.1.-)
Glucose/ribitol dehydrogenase family protein id=3399200 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_110_22
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26372..27706
DNA (1335bp) protein (445aa)
cytochrome bd-type quinol oxidase subunit 1 Tax=RBG_16_Deltaproteobacteria_64_85_curated
Cytochrome bd ubiquinol oxidase subunit I id=4582710 bin=GWC2_Deltaproteobacteria_66_88 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
cytochrome bd-type quinol oxidase subunit 1
RBG_16_DPX2_64_85_RBG_16_scaffold_110_23
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27709..28740
DNA (1032bp) protein (344aa)
cytochrome bd-type quinol oxidase, subunit 2 Tax=RBG_16_Deltaproteobacteria_64_85_curated
cytochrome bd-type quinol oxidase, subunit 2 id=14624204 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
cytochrome bd-type quinol oxidase, subunit 2
RBG_16_DPX2_64_85_RBG_16_scaffold_110_24
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28731..29669)
DNA (939bp) protein (313aa)
Transcriptional regulator n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TH16_CALNY
transcriptional regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_110_25
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29671..30393)
DNA (723bp) protein (241aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
monosaccharide-transporting ATPase (EC:3.6.3.17); K01996 branched-chain amino acid transport system ATP-binding protein id=14624206 bin=bin5_DeltaP species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
monosaccharide-transporting ATPase (EC:3.6.3.17)
RBG_16_DPX2_64_85_RBG_16_scaffold_110_26
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30415..31191)
DNA (777bp) protein (259aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Branched-chain amino acid ABC transporter ATP-binding protein id=1718311 bin=GWB2_Deltaproteobacteria_65_81 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
branched-chain amino acid ABC transporter ATP-binding protein
Displaying items 1-30 of 84 in total

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