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RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_1
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113..631)
DNA (519bp) protein (173aa)
Putative cytochrome c-type protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ19_THIDA
putative cytochrome c-type protein Tax=RBG_16_Gamma2_65_34_curated
cytochrome c-type protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_trna_1
unknown

Not on your lists

851..924
DNA (74bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_2
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1230..2669)
DNA (1440bp) protein (480aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4) Tax=RBG_16_Gamma2_65_34_curated
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3V0_9GAMM
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_3
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2743..3933)
DNA (1191bp) protein (397aa)
dihydrolipoamide acetyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] Tax=RBG_16_Gamma2_65_34_curated
Dihydrolipoamide acetyltransferase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3U9_9GAMM
dihydrolipoamide acetyltransferase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_4
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3972..6809)
DNA (2838bp) protein (946aa)
alpha-ketoglutarate decarboxylase; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] Tax=RBG_16_Gamma2_65_34_curated
sucA; 2-oxoglutarate dehydrogenase (EC:1.2.4.2)
Alpha-ketoglutarate decarboxylase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G3U8_9GAMM
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6963..7604)
DNA (642bp) protein (214aa)
Thiol:disulfide interchange protein n=1 Tax=Pseudomonas sp. Chol1 RepID=K5YJW3_9PSED
DSBA oxidoreductase; K03673 thiol:disulfide interchange protein DsbA Tax=RBG_16_Gamma2_65_34_curated
thiol:disulfide interchange protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_6
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7786..9189)
DNA (1404bp) protein (468aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-] Tax=RBG_16_Gamma2_65_34_cura
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DDI5_9GAMM
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_7
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9189..9683)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J8P0_NITOC
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_8
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9719..10207)
DNA (489bp) protein (163aa)
Tax=RBG_16_Gamma2_65_34_curated
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_9
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10274..11449
DNA (1176bp) protein (392aa)
ribonuclease D (EC:3.1.13.5); K03684 ribonuclease D [EC:3.1.13.5] Tax=RBG_16_Gamma2_65_34_curated
ribonuclease D (EC:3.1.13.5)
Ribonuclease D n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G4X6_9GAMM
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_10
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11456..12325
DNA (870bp) protein (290aa)
Tax=RBG_16_Gamma2_65_34_curated
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_11
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12322..13443)
DNA (1122bp) protein (374aa)
membrane-bound lytic murein transglycosylase; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-] Tax=RBG_16_Gamma2_65_34_curated
Membrane-bound lytic murein transglycosylase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QK30_AZOSU
membrane-bound lytic murein transglycosylase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_12
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13562..14296
DNA (735bp) protein (245aa)
putative permease Tax=RBG_16_Gamma2_65_34_curated
putative permease id=14632078 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin9_gal15 organism_group=GAL15
putative permease
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_13
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14450..15133)
DNA (684bp) protein (228aa)
Tax=RBG_16_Gamma2_65_34_curated
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15207..17576)
DNA (2370bp) protein (790aa)
topA; DNA topoisomerase 1; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RBG_16_Gamma2_65_34_curated
DNA topoisomerase 1 n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SUD7_META2
topA; DNA topoisomerase 1
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17726..18211)
DNA (486bp) protein (162aa)
Protein Smg homolog n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3C1_NITHN
hypothetical protein; K03747 Smg protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_16
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18235..19365)
DNA (1131bp) protein (377aa)
DNA protecting protein DprA n=2 Tax=Nitrosococcus oceani RepID=Q3J6U2_NITOC
SMF protein; K04096 DNA processing protein Tax=RBG_16_Gamma2_65_34_curated
SMF protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_17
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19402..20499)
DNA (1098bp) protein (366aa)
peptidoglycan-binding protein n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B69B8C
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_18
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20652..21155
DNA (504bp) protein (168aa)
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RBG_16_Gamma2_65_34_curated
Peptide deformylase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CEE5_9GAMM
peptide deformylase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_19
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21235..22164
DNA (930bp) protein (310aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000364954B
methionyl-tRNA formyltransferase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_20
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22170..23489
DNA (1320bp) protein (440aa)
sun; ribosomal RNA small subunit methyltransferase B; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RBG_16_Gamma2_65_34_curated
16S rRNA methyltransferase n=1 Tax=Pseudomonas stutzeri RepID=UPI0002EF069D
ribosomal RNA small subunit methyltransferase B
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_21
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23467..24036
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DWI9_9GAMM
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_22
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24033..26318
DNA (2286bp) protein (762aa)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GU15_THISH
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_16_Gamma2_65_34_curated
PAS/PAC sensor signal transduction histidine kinase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_23
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26315..27733
DNA (1419bp) protein (473aa)
nitrogen assimilation regulatory protein NtrX n=1 Tax=Lamprocystis purpurea RepID=UPI00036398CF
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RBG_16_Gamma2_65_34_curated
nitrogen assimilation regulatory protein NtrX
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_24
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27841..29220
DNA (1380bp) protein (460aa)
TrkA-N domain protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A5C5_ALKEH
trkA; potassium transporter peripheral membrane component; K03499 trk system potassium uptake protein TrkA Tax=RBG_16_Gamma2_65_34_curated
trkA; potassium transporter peripheral membrane component
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2511_25
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29223..29759
DNA (537bp) protein (179aa)
Trk system potassium uptake protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z2Z4_9GAMM
TrkH family potassium uptake protein Tax=RBG_16_Gamma2_65_34_curated
TrkH family potassium uptake protein
Displaying 26 items

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