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RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_1
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(353..808)
DNA (456bp) protein (152aa)
Fur family regulator iron uptake Fur n=3 Tax=Acidithiobacillus caldus RepID=F9ZSI6_ACICS
fur family regulator iron uptake Fur; K03711 Fur family transcriptional regulator, ferric uptake regulator Tax=RBG_16_Gamma2_65_34_curated
Ferric uptake regulation protein FUR
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_2
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

911..1339
DNA (429bp) protein (143aa)
Outer membrane protein assembly factor BamE n=4 Tax=Azotobacter vinelandii RepID=C1DFM7_AZOVD
omlA; outer membrane lipoprotein OmlA; K06186 small protein A Tax=RBG_16_Gamma2_65_34_curated
omlA; outer membrane lipoprotein OmlA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_3
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1341..1643)
DNA (303bp) protein (101aa)
UPF0125 protein Tbd_1754 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI26_THIDA
hypothetical protein; K09801 hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_4
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1956..2396)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003676C05
cyclase/dehydrase Tax=RBG_16_Gamma2_65_34_curated
cyclase/dehydrase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2393..3724)
DNA (1332bp) protein (444aa)
Transporter n=1 Tax=Marichromatium purpuratum 984 RepID=F9U0Q8_MARPU
sodium:neurotransmitter symporter; K03308 neurotransmitter:Na+ symporter, NSS family Tax=RBG_16_Gamma2_65_34_curated
transporter
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_6
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4154..4627
DNA (474bp) protein (158aa)
SsrA-binding protein n=1 Tax=Methylococcus capsulatus RepID=UPI00030D9456
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RBG_16_Gamma2_65_34_curated
smpB; SsrA-binding protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_7
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4815..5351)
DNA (537bp) protein (179aa)
Tax=RBG_16_Gamma2_65_34_curated
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_8
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5573..6844)
DNA (1272bp) protein (424aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Thiobacillus thioparus RepID=UPI0003728980
sqr; sulfide:quinone oxidoreductase Tax=RBG_16_Gamma2_65_34_curated
sqr; sulfide:quinone oxidoreductase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_9
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6991..7542)
DNA (552bp) protein (184aa)
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein id=12494941 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_10
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7709..8788)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=K6V6H7_9PROT id=5225068 bin=16ft_combo_ws3_JS1 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter membrane protein Tax=RBG_16_Gamma2_65_34_curated
ABC transporter membrane protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_11
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8949..10040)
DNA (1092bp) protein (364aa)
Export ABC transporter permease protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LXA4_SYNAS id=5225067 bin=16ft_combo_ws3_JS1 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein; K09686 antibiotic transport system permease protein Tax=RBG_16_Gamma2_65_34_curated
export ABC transporter permease
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_12
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10185..11141)
DNA (957bp) protein (319aa)
ABC transporter ATP-binding protein Tax=RBG_16_Gamma2_65_34_curated
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein id=24433936 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter related protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_13
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11250..12176)
DNA (927bp) protein (309aa)
ABC transporter, ATP-binding protein n=2 Tax=Geobacter sulfurreducens RepID=D7AMQ5_GEOSK id=5225065 bin=16ft_combo_ws3_JS1 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Gamma2_65_34_curated
ABC transporter related protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12173..13012)
DNA (840bp) protein (280aa)
secretion protein HlyD; K01993 HlyD family secretion protein Tax=RBG_16_Gamma2_65_34_curated
secretion protein HlyD
Efflux pump, RND family, membrane fusion protein id=4831050 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13009..14361)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AGV5_9PROT
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_16
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14376..15248)
DNA (873bp) protein (291aa)
Secreted protein n=1 Tax=uncultured microorganism RepID=F8UH26_9ZZZZ
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_17
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15253..15732)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM08_NITHX
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_18
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15779..16048)
DNA (270bp) protein (90aa)
Tax=RBG_16_Gamma2_65_34_curated
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_19
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16228..16938
DNA (711bp) protein (237aa)
Transcriptional regulatory protein OmpR n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIB9_9PROT
transcriptional regulatory protein OmpR Tax=RBG_16_Gamma2_65_34_curated
transcriptional regulatory protein OmpR
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_3884_20
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16935..17924
DNA (990bp) protein (330aa)
periplasmic sensor signal transduction histidine kinase; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] Tax=RBG_16_Gamma2_65_34_curated
Osmolarity sensor protein EnvZ n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FIJ4_9GAMM
integral membrane sensor signal transduction histidine kinase
Displaying 20 items

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