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RBG_16_WS3_71_46_RBG_16_scaffold_7252

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_WS3_71_46_RBG_16_scaffold_7252_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2..97
DNA (96bp) protein (32aa)
id=5225531 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225531 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_7252_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

450..1013
DNA (564bp) protein (188aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZV5_ANATU id=5225532 bin=16ft_combo_ws3_JS1 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_WS3X_71_46_curated
RNA polymerase ECF-type sigma factor
RBG_16_WS3_71_46_RBG_16_scaffold_7252_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1010..2005
DNA (996bp) protein (332aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHR0_CHLTF id=5225533 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_7252_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2015..2932
DNA (918bp) protein (306aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHR1_CHLTF id=5225534 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
multidrug ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
multidrug ABC transporter ATPase rbh
RBG_16_WS3_71_46_RBG_16_scaffold_7252_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2929..3771
DNA (843bp) protein (281aa)
ABC-type transport system involved in multi-copper enzyme maturation, permease component n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDN7_CHLTF id=5225535 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
multi-copper enzyme maturation ABC transporter permease Tax=RBG_16_RIF_WS3X_71_46_curated
multi-copper enzyme maturation ABC transporter permease
RBG_16_WS3_71_46_RBG_16_scaffold_7252_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3906..5252)
DNA (1347bp) protein (449aa)
allantoinase; K01466 allantoinase [EC:3.5.2.5] Tax=RBG_16_RIF_WS3X_71_46_curated
Allantoinase n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CMI8_MYXFH
allantoinase
RBG_16_WS3_71_46_RBG_16_scaffold_7252_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5453..7135
DNA (1683bp) protein (561aa)
Oligopeptide ABC transporter periplasmic oligopeptide-binding protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NDV6_GLOVI id=5225538 bin=16ft_combo_ws3_JS1 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein Tax=RBG_16_RIF_WS3X_71_46_curated
oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
RBG_16_WS3_71_46_RBG_16_scaffold_7252_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7144..8067
DNA (924bp) protein (308aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EJS9_CORAD id=5225539 bin=16ft_combo_ws3_JS1 species=Coraliomargarita akajimensis genus=Coraliomargarita taxon_order=Puniceicoccales taxon_class=Opitutae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
binding-protein-dependent transport system inner membrane protein; K15581 oligopeptide transport system permease protein Tax=RBG_16_RIF_WS3X_71_46_curated
oppB; oligopeptide transporter permease
RBG_16_WS3_71_46_RBG_16_scaffold_7252_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8079..8987
DNA (909bp) protein (303aa)
oppC; binding-protein-dependent transport systems inner membrane component id=24476649 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oppC; binding-protein-dependent transport systems inner membrane component Tax=RBG_16_RIF_WS3X_71_46_curated
oppC; binding-protein-dependent transport systems inner membrane component
RBG_16_WS3_71_46_RBG_16_scaffold_7252_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9465..11126
DNA (1662bp) protein (554aa)
periplasmic sensor signal transduction histidine kinase Tax=RBG_16_RIF_WS3X_71_46_curated
periplasmic sensor signal transduction histidine kinase id=24476650 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
periplasmic sensor signal transduction histidine kinase
RBG_16_WS3_71_46_RBG_16_scaffold_7252_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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11130..12440
DNA (1311bp) protein (437aa)
Sigma-54 dependent response regulator n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P7Y0_9BACT id=5225542 bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Fis family transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
sigma-54 dependent response regulator
RBG_16_WS3_71_46_RBG_16_scaffold_7252_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12683..13213)
DNA (531bp) protein (177aa)
CHRD domain containing protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B0G2_HERA2 id=5225543 bin=16ft_combo_ws3_JS1 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
CHRD domain-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
CHRD domain-containing protein
RBG_16_WS3_71_46_RBG_16_scaffold_7252_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13459..14664)
DNA (1206bp) protein (402aa)
NAD(FAD)-dependent dehydrogenase id=24476653 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
NAD(FAD)-dependent dehydrogenase Tax=RBG_16_RIF_WS3X_71_46_curated
NAD(FAD)-dependent dehydrogenase
RBG_16_WS3_71_46_RBG_16_scaffold_7252_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(14722..16146)
DNA (1425bp) protein (475aa)
MATE efflux family protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XU31_9BACT id=5225545 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative multidrug resistance protein Tax=RBG_16_RIF_WS3X_71_46_curated
MATE efflux family protein
RBG_16_WS3_71_46_RBG_16_scaffold_7252_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16143..17318)
DNA (1176bp) protein (392aa)
solA; N-methyltryptophan oxidase (EC:1.5.3.1); K00301 sarcosine oxidase [EC:1.5.3.1] id=24476656 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
solA; N-methyltryptophan oxidase (EC:1.5.3.1); K00301 sarcosine oxidase [EC:1.5.3.1] Tax=RBG_16_RIF_WS3X_71_46_curated
FAD dependent oxidoreductase
RBG_16_WS3_71_46_RBG_16_scaffold_7252_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(17338..18129)
DNA (792bp) protein (264aa)
abortive infection protein; K07052 id=24476657 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Glaciecola pallidula genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
abortive infection protein; K07052 Tax=RBG_16_RIF_WS3X_71_46_curated
abortive infection protein
RBG_16_WS3_71_46_RBG_16_scaffold_7252_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18170..18688)
DNA (519bp) protein (173aa)
tag; 3-methyladenine DNA glycosylase; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] Tax=RBG_16_RIF_WS3X_71_46_curated
tag; 3-methyladenine DNA glycosylase; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] id=24476658 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
tag; 3-methyladenine DNA glycosylase
RBG_16_WS3_71_46_RBG_16_scaffold_7252_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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19144..19422
DNA (279bp) protein (93aa)
Cold shock DNA/RNA-binding protein n=2 Tax=Geobacter metallireducens RepID=Q39W72_GEOMG id=5225549 bin=16ft_combo_ws3_JS1 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RBG_16_RIF_WS3X_71_46_curated
cold shock DNA/RNA-binding protein
RBG_16_WS3_71_46_RBG_16_scaffold_7252_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19521..21797)
DNA (2277bp) protein (759aa)
id=5225550 Tax=RBG_16_RIF_WS3X_71_46_curated
id=5225550 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_7252_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22104..23138
DNA (1035bp) protein (345aa)
DNA methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] Tax=RBG_16_RIF_WS3X_7
Methylated-DNA-(Protein)-cysteine S-methyltransferase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPN2_9BACT
DNA methyltransferase
RBG_16_WS3_71_46_RBG_16_scaffold_7252_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(23386..24660)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GTJ9_9CYAN id=5225553 bin=16ft_combo_ws3_JS1 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative prenyltransferase, UbiA family (modular protein) Tax=RBG_16_RIF_WS3X_71_46_curated
putative prenyltransferase, UbiA family (modular protein)
RBG_16_WS3_71_46_RBG_16_scaffold_7252_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24681..25964)
DNA (1284bp) protein (428aa)
id=5225554 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5225554 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_7252_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(26083..32637)
DNA (6555bp) protein (2185aa)
Glutamate synthase (NADPH) GltB2 subunit Tax=RBG_16_RIF_WS3X_71_46_curated
Glutamate synthase (NADPH) GltB2 subunit id=24572058 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Glutamate synthase (NADPH) GltB2 subunit
RBG_16_WS3_71_46_RBG_16_scaffold_7252_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(32634..34196)
DNA (1563bp) protein (521aa)
FAD/FMN-containing dehydrogenases n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQK8_9BACT id=5225558 bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
polyferredoxin Tax=RBG_16_RIF_WS3X_71_46_curated
polyferredoxin
Displaying 24 items

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