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RBG_16_WS3_71_46_RBG_16_scaffold_2321

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_WS3_71_46_RBG_16_scaffold_2321_16S_1
unknown

Not on your lists

2..647
DNA (646bp)
RBG_16_WS3_71_46_RBG_16_scaffold_2321_trna_1
unknown

Not on your lists

915..988
DNA (74bp)
transferRNA
RBG_16_WS3_71_46_RBG_16_scaffold_2321_trna_2
unknown

Not on your lists

1034..1106
DNA (73bp)
transferRNA
RBG_16_WS3_71_46_RBG_16_scaffold_2321_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4893..5690
DNA (798bp) protein (266aa)
alias=16ft_combo_ws3_scaffold_2321_1 id=24529113 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alias=16ft_combo_ws3_scaffold_2321_1 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5719..7167
DNA (1449bp) protein (483aa)
id=5224535 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5224535 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7345..9084
DNA (1740bp) protein (580aa)
signal peptide peptidase SppA, 67K type; K04773 protease IV [EC:3.4.21.-] Tax=RBG_16_RIF_WS3X_71_46_curated
signal peptide peptidase SppA, 67K type; K04773 protease IV [EC:3.4.21.-] id=24529111 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
signal peptide peptidase SppA, 67K type
RBG_16_WS3_71_46_RBG_16_scaffold_2321_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9280..9750)
DNA (471bp) protein (157aa)
Putative Cytochrome c55X n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PJI6_9BACT id=5224538 bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Putative Cytochrome c55X Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10056..12158
DNA (2103bp) protein (701aa)
Translation elongation factor G n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2YZV2_9BACT id=5224539 bin=16ft_combo_ws3_JS1 species=uncultured Latescibacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
fusA; translation elongation factor G; K02355 elongation factor G Tax=RBG_16_RIF_WS3X_71_46_curated
protein translation elongation factor G
RBG_16_WS3_71_46_RBG_16_scaffold_2321_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12176..12925
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein HRM2_04000 n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=Y400_DESAH id=5224540 bin=16ft_combo_ws3_JS1 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_2321_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12941..13480
DNA (540bp) protein (180aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RBG_16_RIF_WS3X_71_46_curated
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XP84_9BACT id=5224541 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2321_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13477..14094
DNA (618bp) protein (206aa)
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RBG_16_RIF_WS3X_71_46_curated
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Saccharomonospora glauca K62 RepID=I1D110_9PSEU id=5224542 bin=16ft_combo_ws3_JS1 species=Saccharomonospora glauca genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ruvA; Holliday junction DNA helicase RuvA
RBG_16_WS3_71_46_RBG_16_scaffold_2321_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14145..15242
DNA (1098bp) protein (366aa)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XP86_9BACT id=5224543 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Holliday junction DNA helicase subunit RuvB Tax=RBG_16_RIF_WS3X_71_46_curated
Holliday junction DNA helicase subunit RuvB
RBG_16_WS3_71_46_RBG_16_scaffold_2321_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15452..16480
DNA (1029bp) protein (343aa)
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RBG_16_RIF_WS3X_71_46_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NQA7_MARHT id=5224544 bin=16ft_combo_ws3_JS1 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
RBG_16_WS3_71_46_RBG_16_scaffold_2321_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16499..18049)
DNA (1551bp) protein (517aa)
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] id=24526470 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] Tax=RBG_16_RIF_WS3X_71_46_curated
carboxyl transferase
RBG_16_WS3_71_46_RBG_16_scaffold_2321_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18260..20122
DNA (1863bp) protein (621aa)
Arsenite transport protein n=13 Tax=Haloferax RepID=D4GZR2_HALVD id=5224546 bin=16ft_combo_ws3_JS1 species=unknown genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
membrane protein Tax=RBG_16_RIF_WS3X_71_46_curated
membrane protein
RBG_16_WS3_71_46_RBG_16_scaffold_2321_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

20156..21271
DNA (1116bp) protein (372aa)
aminotransferase (EC:2.6.1.-); K00837 [EC:2.6.1.-] Tax=RBG_16_RIF_WS3X_71_46_curated
aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AV4_SOLUE id=5224547 bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2321_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

21268..21729
DNA (462bp) protein (154aa)
hypothetical protein; K09117 hypothetical protein id=24526466 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein; K09117 hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
RBG_16_WS3_71_46_RBG_16_scaffold_2321_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22222..23010
DNA (789bp) protein (263aa)
id=5224549 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5224549 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(23199..24095)
DNA (897bp) protein (299aa)
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] id=24526463 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] Tax=RBG_16_RIF_WS3X_71_46_curated
monofunctional biosynthetic peptidoglycan transglycosylase
RBG_16_WS3_71_46_RBG_16_scaffold_2321_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(24109..25437)
DNA (1329bp) protein (443aa)
Serine phosphatase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM31_KORVE id=5224551 bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
serine phosphatase Tax=RBG_16_RIF_WS3X_71_46_curated
serine phosphatase
RBG_16_WS3_71_46_RBG_16_scaffold_2321_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25809..26615
DNA (807bp) protein (269aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55) Tax=RBG_16_RIF_WS3X_71_46_curated
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
Enoyl-CoA hydratase/isomerase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XRM6_9BACT id=5224552 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RBG_16_WS3_71_46_RBG_16_scaffold_2321_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

26685..27125
DNA (441bp) protein (147aa)
yhiD; MgtC family protein YhiD; K07507 putative Mg2+ transporter-C (MgtC) family protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=14623221 bin=bin5_DeltaP species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin5_DeltaP organism_group=Deltaproteobacteria
methyltransferase
RBG_16_WS3_71_46_RBG_16_scaffold_2321_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(27148..27267)
DNA (120bp) protein (40aa)
id=5224554 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5224554 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

27653..28147
DNA (495bp) protein (165aa)
Putative peptidoglycan-binding domain-containing protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVN7_9BURK id=5224555 bin=16ft_combo_ws3_JS1 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative phage-like protein Tax=RBG_16_RIF_WS3X_71_46_curated
putative phage-like protein
RBG_16_WS3_71_46_RBG_16_scaffold_2321_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28102..28311
DNA (210bp) protein (70aa)
Carboxypeptidase n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YMI6_LYNSP id=5224556 bin=16ft_combo_ws3_JS1 species=unknown genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Carboxypeptidase Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_23
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

28308..28898
DNA (591bp) protein (197aa)
id=5224557 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
id=5224557 Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(29537..30613)
DNA (1077bp) protein (359aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RBG_16_RIF_WS3X_71_46_curated
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] id=1250074 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
RBG_16_WS3_71_46_RBG_16_scaffold_2321_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(30654..31949)
DNA (1296bp) protein (432aa)
TPR repeat-containing protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LM82_9BURK id=5224559 bin=16ft_combo_ws3_JS1 species=Rubrivivax benzoatilyticus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TPR repeat-containing protein Tax=RBG_16_RIF_WS3X_71_46_curated
RBG_16_WS3_71_46_RBG_16_scaffold_2321_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(31970..33319)
DNA (1350bp) protein (450aa)
2-isopropylmalate synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 id=5224560 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-isopropylmalate synthase Tax=RBG_16_RIF_WS3X_71_46_curated
2-isopropylmalate synthase
RBG_16_WS3_71_46_RBG_16_scaffold_2321_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

33422..35359
DNA (1938bp) protein (646aa)
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein id=24556551 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Displaying items 1-30 of 34 in total

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