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RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_1
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

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318..551
DNA (234bp) protein (78aa)
hypothetical protein; K09779 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
id=3676537 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_2
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

790..1482
DNA (693bp) protein (231aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_3
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

1582..1743
DNA (162bp) protein (54aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_4
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

1826..2107
DNA (282bp) protein (94aa)
DNA-binding protein, IHF-related; K03530 DNA-binding protein HU-beta Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DNA-binding protein, IHF-related; K03530 DNA-binding protein HU-beta id=137711 bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
DNA-binding protein, IHF-related
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_5
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

2202..3407
DNA (1206bp) protein (402aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA id=4242101 bin=GWC2_OD1_43_27 species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_6
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

3475..4854
DNA (1380bp) protein (460aa)
speE; spermidine synthase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Spermidine synthase id=3514581 bin=GWF2_OP3_38_59 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
spermidine synthase
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_7
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4983..6584
DNA (1602bp) protein (534aa)
RNA polymerase sigma factor RpoD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GG53_9DELT
rpoD; RNA polymerase, sigma(70) factor; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
rpoD; RNA polymerase sigma-70 factor RpoD
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_8
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


6663..8561
DNA (1899bp) protein (633aa)
alaS; Alanine--tRNA ligase (EC:6.1.1.7) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
tde:TDE1659 alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=16578 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
alaS; Alanine--tRNA ligase (EC:6.1.1.7)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_31729_9
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

8602..9045
DNA (444bp) protein (148aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Displaying 9 items

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