ggKbase home page

RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_1
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(2..202)
-----------------
DNA (201bp)
protein (67aa)
single-stranded DNA-binding protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003765673
single-strand binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
single-strand binding protein
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_2
R_OP3X_63_14, OP3X, Bacteria

Not on your lists


comp(202..492)
-----------------
DNA (291bp)
protein (97aa)
30S ribosomal protein S6 n=2 Tax=Thermoanaerobacter RepID=D3T6V8_THEIA
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
30S ribosomal protein S6
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_3
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(492..782)
-----------------
DNA (291bp)
protein (97aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=4 Tax=Desulfitobacterium hafniense RepID=PTH_DESHD
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_4
R_OP3X_63_14, OP3X, Bacteria

Not on your lists


comp(1018..1737)
-----------------
DNA (720bp)
protein (240aa)
rplY; 50S ribosomal protein L25 (General stress protein CTC) Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
50S ribosomal protein L25 id=4123723 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rplY; 50S ribosomal protein L25 (General stress protein CTC)
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_5
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(1757..2695)
-----------------
DNA (939bp)
protein (313aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4123722 bin=GWF2_OP3_43_52 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_6
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(2692..3921)
-----------------
DNA (1230bp)
protein (410aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
Bifunctional protein GlmU id=4927191 bin=GWC2_OP3-like_45_7 species=MEL_A1 genus=MEL_A1 taxon_order=MEL_A1 taxon_class=MEL_A1 phylum=Melainabacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_7
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(3962..5251)
-----------------
DNA (1290bp)
protein (430aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Bacillus macauensis ZFHKF-1 RepID=I8AIR0_9BACI
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_trna_1
unknown

Not on your lists

comp(5262..5332)
-----------------
DNA (71bp)
transferRNA
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_8
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(5387..6115)
-----------------
DNA (729bp)
protein (243aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=ISPE_GEOBB
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_9
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(6189..7061)
-----------------
DNA (873bp)
protein (291aa)
Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_10
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(7111..8751)
-----------------
DNA (1641bp)
protein (547aa)
metallo-protease FtsH Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
Metallo-protease FtsH id=1705749 bin=GWB2_Elusimicrobium_63_22 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
metallo-protease FtsH
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_11
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(8831..8926)
-----------------
DNA (96bp)
protein (32aa)
Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_12
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(9071..9970)
-----------------
DNA (900bp)
protein (300aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17); K00765 ATP phosphoribosyltransferase [EC:2.4.2.17] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase id=2005854 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_13
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

10057..11196
-----------------
DNA (1140bp)
protein (380aa)
peptidylprolyl cis-trans isomerase (EC:5.2.1.8); K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
peptidylprolyl cis-trans isomerase (EC:5.2.1.8)
Putative uncharacterized protein id=2255930 bin=GWA2_OP3_53_43 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_14
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(11150..11614)
-----------------
DNA (465bp)
protein (155aa)
transcriptional regulator NrdR Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
Transcriptional repressor NrdR id=2849835 bin=GWF2_OP3_43_52 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
nrdR; transcriptional regulator NrdR
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_15
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(11691..13019)
-----------------
DNA (1329bp)
protein (443aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=4216016 bin=GWF2_Geobacter_54_21 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_16
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(12991..13464)
-----------------
DNA (474bp)
protein (158aa)
ribose-5-phosphate isomerase; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
Ribose-5-phosphate isomerase B id=2849849 bin=GWF2_OP3_43_52 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
ribose-5-phosphate isomerase
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_17
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(13457..13873)
-----------------
DNA (417bp)
protein (139aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
Protein tyrosine phosphatase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S005_THEOJ
protein tyrosine phosphatase
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_18
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(14051..14533)
-----------------
DNA (483bp)
protein (161aa)
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
N5-carboxyaminoimidazole ribonucleotide mutase id=2230718 bin=GWB2_CP_45_9 species=Oenococcus oeni genus=Oenococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_19
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(14530..15810)
-----------------
DNA (1281bp)
protein (427aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T214_THEA1
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_20
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(15807..16799)
-----------------
DNA (993bp)
protein (331aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase id=2230724 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_21
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(16833..18227)
-----------------
DNA (1395bp)
protein (465aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
Twitching motility protein id=2882010 bin=GWF2_OP3_43_52 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
twitching motility protein
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_22
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(18237..19856)
-----------------
DNA (1620bp)
protein (540aa)
choline dehydrogenase-like flavoprotein Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
4Fe-4S ferredoxin id=24459386 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
choline dehydrogenase-like flavoprotein
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_23
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(19853..20077)
-----------------
DNA (225bp)
protein (75aa)
Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_24
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(21157..22311)
-----------------
DNA (1155bp)
protein (385aa)
glycosyl transferase family 2 protein Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
Genome sequencing data, contig C323 id=3804830 bin=GWA2_Elusimicrobia_66_18 species=unknown genus=Microcystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
glycosyl transferase family 2 protein
RIFCSPHIGHO2_02_FULL_CPR_63_14_rifcsphigho2_02_scaffold_7873_25
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

comp(22312..22602)
-----------------
DNA (291bp)
protein (97aa)
Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
Displaying 26 items

View Taxonomy