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RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1268)
DNA (1266bp) protein (422aa)
Membrane protein insertase YidC n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C432_NITHN
Membrane protein insertase YidC n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C432_NITHN
hypothetical protein; K03217 preprotein translocase subunit YidC Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein; K03217 preprotein translocase subunit YidC Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1497..1787)
DNA (291bp) protein (97aa)
Ribonuclease P protein component n=1 Tax=Spiribacter salinus M19-40 RepID=R4V7C9_9GAMM
Ribonuclease P protein component n=1 Tax=Spiribacter salinus M19-40 RepID=R4V7C9_9GAMM
ribonuclease P protein component Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ribonuclease P protein component Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1871..2005)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGR3_PARBH
50S ribosomal protein L34 n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TGR3_PARBH
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2207..3544
DNA (1338bp) protein (446aa)
chromosomal replication initiation protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036F3B1B
chromosomal replication initiation protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036F3B1B
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3765..4865
DNA (1101bp) protein (367aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DNA polymerase III subunit beta n=1 Tax=Pseudomonas putida CSV86 RepID=L1LX95_PSEPU
DNA polymerase III subunit beta n=1 Tax=Pseudomonas putida CSV86 RepID=L1LX95_PSEPU
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4941..7370
DNA (2430bp) protein (810aa)
DNA gyrase subunit B n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CE95_9GAMM
DNA gyrase subunit B n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CE95_9GAMM
DNA gyrase subunit B Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DNA gyrase subunit B Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7413..7796)
DNA (384bp) protein (128aa)
magnesium transporter ApaG n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000375CA94
magnesium transporter ApaG n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000375CA94
ApaG domain-containing protein; K06195 ApaG protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ApaG domain-containing protein; K06195 ApaG protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7863..8267)
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C476_9GAMM
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C476_9GAMM
putative threonine efflux protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
putative threonine efflux protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8257..9093)
DNA (837bp) protein (279aa)
bis(5'nucleosyl)-tetraphosphatase ApaH (EC:3.6.1.41); K01525 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
bis(5'nucleosyl)-tetraphosphatase ApaH (EC:3.6.1.41); K01525 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
bis(5'nucleosyl)-tetraphosphatase ApaH (EC:3.6.1.41)
bis(5'nucleosyl)-tetraphosphatase ApaH (EC:3.6.1.41)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9093..10061)
DNA (969bp) protein (323aa)
pip; proline iminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
pip; proline iminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
pip; proline iminopeptidase (EC:3.4.11.5)
pip; proline iminopeptidase (EC:3.4.11.5)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10074..11027)
DNA (954bp) protein (318aa)
Beta-lactamase domain protein n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FIX9_9GAMM
Beta-lactamase domain protein n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FIX9_9GAMM
beta-lactamase domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
beta-lactamase domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11099..11914)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Prochlorothrix hollandica RepID=UPI0003448B7A
hypothetical protein n=1 Tax=Prochlorothrix hollandica RepID=UPI0003448B7A
protein of unknown function DUF155 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
protein of unknown function DUF155 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11935..12783)
DNA (849bp) protein (283aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] id=12496377 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] id=12496377 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12897..14312)
DNA (1416bp) protein (472aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14499..15683)
DNA (1185bp) protein (395aa)
metK-1; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
metK-1; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
metK-1; S-adenosylmethionine synthetase (EC:2.5.1.6)
metK-1; S-adenosylmethionine synthetase (EC:2.5.1.6)
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15777..16187)
DNA (411bp) protein (137aa)
Rhodanese-related sulfurtransferase (EC:2.8.1.1) id=24570167 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thiocystis violascens genus=Thiocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Rhodanese-related sulfurtransferase (EC:2.8.1.1) id=24570167 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thiocystis violascens genus=Thiocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Rhodanese domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Rhodanese domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16340..17008
DNA (669bp) protein (223aa)
ttcA_[H]; tRNA(Cytosine32)-2-thiocytidine synthetase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ttcA_[H]; tRNA(Cytosine32)-2-thiocytidine synthetase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATPase of the PP-loop superfamily implicated in cell cycle control id=24570166 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ATPase of the PP-loop superfamily implicated in cell cycle control id=24570166 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17047..17913)
DNA (867bp) protein (289aa)
Peptidase M48 Ste24p n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTW2_SIDLE
Peptidase M48 Ste24p n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTW2_SIDLE
peptidase M48 Ste24p Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
peptidase M48 Ste24p Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17926..18537)
DNA (612bp) protein (204aa)
ligand-binding protein SH3 n=1 Tax=Methylotenera RepID=UPI000372BB6E
ligand-binding protein SH3 n=1 Tax=Methylotenera RepID=UPI000372BB6E
sh3 type 3 domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sh3 type 3 domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18534..20345)
DNA (1812bp) protein (604aa)
adenylate/guanylate cyclase with Chase sensor; K01768 adenylate cyclase [EC:4.6.1.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
adenylate/guanylate cyclase with Chase sensor; K01768 adenylate cyclase [EC:4.6.1.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Adenylate/guanylate cyclase with Chase sensor n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTW4_SIDLE
Adenylate/guanylate cyclase with Chase sensor n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTW4_SIDLE
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20657..21625
DNA (969bp) protein (323aa)
Lipid A biosynthesis acyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B0A2_9PROT
Lipid A biosynthesis acyltransferase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B0A2_9PROT
lipid A biosynthesis acyltransferase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
lipid A biosynthesis acyltransferase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21618..22535
DNA (918bp) protein (306aa)
lipid A biosynthesis acyltransferase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
lipid A biosynthesis acyltransferase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Lipid A biosynthesis acyltransferase id=3048991 bin=GWC2_Nitrospirae-rel_56_14 species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Lipid A biosynthesis acyltransferase id=3048991 bin=GWC2_Nitrospirae-rel_56_14 species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22559..22990)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AEE4
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AEE4
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23272..23403
DNA (132bp) protein (44aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_60_33_rifcsphigho2_12_scaffold_3053_25
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24170..24985)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGB2_SINAD
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGB2_SINAD
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Displaying 25 items

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