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RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_trna_2
unknown

Not on your lists

comp(44..115)
DNA (72bp)
transferRNA
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

182..763
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
signAl transduction histidine kinase containing a receiver domain id=14627170 bin=bin7_NC10_sister species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

939..1304
DNA (366bp) protein (122aa)
cyclic nucleotide-binding: regulatory protein, Crp; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
cyclic nucleotide-binding: regulatory protein, Crp; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein id=14627169 bin=bin7_NC10_sister species=Thermobifida fusca genus=Thermobifida taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
cyclic nucleotide-binding: regulatory protein, Crp
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1309..1812
DNA (504bp) protein (168aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627168 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1801..2040)
DNA (240bp) protein (80aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2037..2228)
DNA (192bp) protein (64aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2237..3121)
DNA (885bp) protein (295aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=3249163 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3248..3493
DNA (246bp) protein (82aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3532..4359
DNA (828bp) protein (276aa)
dacA; Penicillin-binding protein 5 (D-ala-D-ala-carboxypeptidase); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_
putative D-alanyl-D-alanine carboxypeptidase id=2650885 bin=GWF2_Methylomirabilis_70_14 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dacA; Penicillin-binding protein 5 (D-ala-D-ala-carboxypeptidase)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4364..5023
DNA (660bp) protein (220aa)
haloacid dehalogenase (EC:3.8.1.2); K01560 2-haloacid dehalogenase [EC:3.8.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
haloacid dehalogenase (EC:3.8.1.2)
Haloacid dehalogenase, type II id=4863507 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_10
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5134..5478)
DNA (345bp) protein (115aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Uncharacterized protein id=4863509 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5475..5711)
DNA (237bp) protein (79aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5928..6086)
DNA (159bp) protein (53aa)
fused DNA topoisomerase I/SWI domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Fused DNA topoisomerase I/SWI domain-containing protein id=3222452 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrosopumilus sp. AR2 genus=Nitrosopumilus taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fused DNA topoisomerase I/SWI domain-containing protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6445..8151
DNA (1707bp) protein (569aa)
Phosphomethylpyrimidine synthase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ECN5_9CHLR
thiamine biosynthesis protein ThiC; K03147 thiamine biosynthesis protein ThiC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
thiamine biosynthesis protein ThiC
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(8270..8503)
DNA (234bp) protein (78aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Conserved protein id=3222444 bin=GWC2_Methylomirabilis_70_16 species=Sulfolobus acidocaldarius genus=Sulfolobus taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(8535..9983)
DNA (1449bp) protein (483aa)
Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) id=2650854 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(10087..11169)
DNA (1083bp) protein (361aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] Tax=RIFCSPLOWO2_02
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] id=14627408 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


comp(11191..12240)
DNA (1050bp) protein (350aa)
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
O-sialoglycoprotein endopeptidase; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=14627409 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
O-sialoglycoprotein endopeptidase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12249..13526)
DNA (1278bp) protein (426aa)
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102) id=14627410 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ctpA; Carboxy-terminal-processing protease (C-terminal-processing protease) (EC:3.4.21.102)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(13553..14752)
DNA (1200bp) protein (400aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14749..15312)
DNA (564bp) protein (188aa)
ABC transporter permease; K09811 cell division transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cell division protein FtsX id=14627412 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ABC transporter permease
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15639..16310)
DNA (672bp) protein (224aa)
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein id=14627413 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
cell division ATP-binding protein FtsE
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16375..17835)
DNA (1461bp) protein (487aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) id=14627414 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(17960..19408)
DNA (1449bp) protein (483aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) id=14627415 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_24
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(19411..19701)
DNA (291bp) protein (97aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) id=14627416 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_25
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(19720..20229)
DNA (510bp) protein (170aa)
isochorismatase hydrolase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
isochorismatase hydrolase id=14627417 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
isochorismatase hydrolase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(20467..22428)
DNA (1962bp) protein (654aa)
uvrD; DNA helicase II (EC:3.6.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
uvrD; DNA helicase II (EC:3.6.1.-) id=14627418 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
uvrD; DNA helicase II (EC:3.6.1.-)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_27
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(22467..22853)
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(22863..24701)
DNA (1839bp) protein (613aa)
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=2650591 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_3204_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(24701..25531)
DNA (831bp) protein (277aa)
Bifunctional protein glmU (EC:2.3.1.157); K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] Tax=RIFCSPLOWO2_02_FULL_Ro
Bifunctional protein glmU (EC:2.3.1.157)
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase id=4608909 bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Displaying items 1-30 of 55 in total

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