ggKbase home page

RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2..478
DNA (477bp) protein (159aa)
60 kDa chaperonin id=2197767 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

594..1571
DNA (978bp) protein (326aa)
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein id=14627444 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
oligopeptide ABC transporter ATP-binding protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

1638..1841
DNA (204bp) protein (68aa)
id=14627443 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
id=14627443 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_4
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

1974..2945
DNA (972bp) protein (324aa)
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein id=14627442 bin=bin7_NC10_sister species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptide ABC transporter ATP-binding protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

3007..3756
DNA (750bp) protein (250aa)
hypothetical protein id=14627441 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

3914..4714
DNA (801bp) protein (267aa)
esterase/lipase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
esterase/lipase id=14627440 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
esterase/lipase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4711..5160
DNA (450bp) protein (150aa)
id=14627439 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627439 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5173..6099)
DNA (927bp) protein (309aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
peptidase M23 id=14627438 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptidase M23B
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6202..6618)
DNA (417bp) protein (139aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627437 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(6619..7098)
DNA (480bp) protein (160aa)
hypothetical protein id=14627436 bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(7180..7383)
DNA (204bp) protein (68aa)
id=14627435 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=14627435 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

7578..8750
DNA (1173bp) protein (391aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) id=14627617 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALSr1 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8973..10295
DNA (1323bp) protein (441aa)
homoserine dehydrogenase (HDH): ThrA, MetL (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
homoserine dehydrogenase (HDH): ThrA, MetL (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=14627618 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
homoserine dehydrogenase ThrA (EC:1.1.1.3)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10348..11406
DNA (1059bp) protein (353aa)
L-threonine synthase (EC:4.2.3.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
L-threonine synthase (EC:4.2.3.1) id=14627619 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
L-threonine synthase (EC:4.2.3.1)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11543..12538
DNA (996bp) protein (332aa)
hypothetical protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein; K07027 id=14627620 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12672..13034
DNA (363bp) protein (121aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627621 bin=bin7_NC10_sister species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13192..13761
DNA (570bp) protein (190aa)
rpoE; RNA polymerase, sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
rpoE; RNA polymerase, sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14627622 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
RNA polymerase sigma factor
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13763..14257
DNA (495bp) protein (165aa)
id=14627623 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627623 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_19
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

14276..14548
DNA (273bp) protein (91aa)
id=14627624 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=14627624 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_20
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

14545..15171
DNA (627bp) protein (209aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14627625 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15546..16580
DNA (1035bp) protein (345aa)
lysC; aspartokinase (EC:2.7.2.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
lysC; aspartokinase (EC:2.7.2.4) id=14627626 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lysC; aspartokinase (EC:2.7.2.4)
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16641..16985)
DNA (345bp) protein (115aa)
PemK family transcriptional regulator n=1 Tax=Chlorogloeopsis RepID=UPI00031F3F5C
transcriptional modulator of MazE/toxin MazF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
transcriptional modulator of MazE/toxin MazF
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17424..17864
DNA (441bp) protein (147aa)
id=14627627 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627627 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17877..18992
DNA (1116bp) protein (372aa)
alcohol dehydrogenase zinc-binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alcohol dehydrogenase zinc-binding domain-containing protein id=14627628 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase zinc-binding domain-containing protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

19072..20097
DNA (1026bp) protein (342aa)
Methyltransferase type 11 n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FFT6_VERMA
type 11 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
type 11 methyltransferase
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20511..20837
DNA (327bp) protein (109aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4555505 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_27
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20834..21274
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG87_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
RIFCSPLOWO2_02_FULL_bin7_NC10_sister_68_19_rifcsplowo2_02_scaffold_17070_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21408..23627
DNA (2220bp) protein (740aa)
Metallo-beta-lactamase superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative Metallo-beta-lactamase superfamily id=4801443 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Metallo-beta-lactamase superfamily
Displaying 28 items

View Taxonomy