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RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..498)
DNA (498bp) protein (166aa)
dcd; Deoxycytidine triphosphate deaminase (dCTP deaminase) (EC:3.5.4.13) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
dcd; Deoxycytidine triphosphate deaminase (dCTP deaminase) (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MER3_9BACT
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(695..976)
DNA (282bp) protein (94aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Uncharacterized protein id=4956288 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(973..1263)
DNA (291bp) protein (97aa)
DNA polymerase beta domain protein region n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1L154_9EURY
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nucleotidyltransferases
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1389..1583)
DNA (195bp) protein (65aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=15194023 bin=GWC2_NOV_55_46 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_NOV_55_46 organism_group=Proteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1690..2103)
DNA (414bp) protein (138aa)
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] id=12555267 bin=CNBR_ACIDO species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleoside diphosphate kinase (EC:2.7.4.6)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2234..3262)
DNA (1029bp) protein (343aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
2-oxoglutarate ferredoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] id=12555268 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
2-oxoglutarate ferredoxin oxidoreductase subunit beta
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3401..5293)
DNA (1893bp) protein (631aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
2-oxoacid:ferredoxin/flavodoxin oxidoreductase gamma subunit family protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] id=12555269 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5457..6332)
DNA (876bp) protein (292aa)
succinyl-CoA synthetase, alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
succinyl-CoA synthetase (ADP-forming) alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] id=12555270 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
succinyl-CoA synthetase, alpha subunit
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6342..7502)
DNA (1161bp) protein (387aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] id=12555271 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7502..8428)
DNA (927bp) protein (309aa)
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] id=12555280 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
malate dehydrogenase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(8520..9851)
DNA (1332bp) protein (444aa)
NADP-dependent isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Isocitrate dehydrogenase, NADP-dependent n=2 Tax=mine drainage metagenome RepID=T1A165_9ZZZZ
NADP-dependent isocitrate dehydrogenase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

10092..11690
DNA (1599bp) protein (533aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
D-3-phosphoglycerate dehydrogenase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVI0_KORVE
D-3-phosphoglycerate dehydrogenase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11691..12575)
DNA (885bp) protein (295aa)
Lipid kinase YegS/Rv2252/BmrU family n=1 Tax=Bacteroides sp. CAG:530 RepID=R6CY00_9BACE
hypothetical protein; K07029 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12746..13399
DNA (654bp) protein (218aa)
3-deoxy-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nucleotidyltransferase n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00036A09EC
3-deoxy-manno-octulosonate cytidylyltransferase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13396..15045
DNA (1650bp) protein (550aa)
pyrG; CTP synthetase; K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
pyrG; CTP synthetase; K01937 CTP synthase [EC:6.3.4.2] id=12555284 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyrG; CTP synthetase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15059..15727
DNA (669bp) protein (223aa)
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] id=12555285 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
2-dehydro-3-deoxyphosphooctonate aldolase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15733..15909
DNA (177bp) protein (59aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15902..16867
DNA (966bp) protein (322aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) id=12555286 bin=CNBR_ACIDO species=Alcanivorax pacificus genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

16877..17431
DNA (555bp) protein (185aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curate
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45) id=12555287 bin=CNBR_ACIDO species=Sutterella wadsworthensis genus=Sutterella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17451..18185
DNA (735bp) protein (245aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XYA6_9BACT
winged helix family two component transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria
PhoB family transcriptional regulator
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18185..19615
DNA (1431bp) protein (477aa)
HAMP domain-containing sensor histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
heavy metal sensor signal transduction histidine kinase id=12553689 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19625..21160
DNA (1536bp) protein (512aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2W5_VARPE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5851_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21207..21530
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000363357E
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
Displaying 23 items

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