ggKbase home page

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..510)
DNA (510bp) protein (170aa)
lysC; Aspartokinase; K00928 aspartate kinase [EC:2.7.2.4] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Aspartokinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XB17_9BACT
lysC; Aspartokinase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(707..2074)
DNA (1368bp) protein (456aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B545DF
ycgA; putative integral inner membrane protein YcgA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2203..2616)
DNA (414bp) protein (138aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QJ21_CATAD
two component transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
two component transcriptional regulator
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2621..2827)
DNA (207bp) protein (69aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3200..6046
DNA (2847bp) protein (949aa)
putative metallopeptidase; K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
putative metallopeptidase; K07263 zinc protease [EC:3.4.24.-] id=12554306 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative metallopeptidase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6084..6686)
DNA (603bp) protein (201aa)
Response regulator receiver protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D048_9BACT id=126151 bin=ACD79 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
response regulator receiver protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
response regulator receiver protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_trna_1
unknown

Not on your lists

6792..6863
DNA (72bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7009..10347
DNA (3339bp) protein (1113aa)
PAS domain S-box n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QGA3_AZOSU
PAS domain S-box Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PAS domain S-box
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10350..11618)
DNA (1269bp) protein (423aa)
general secretion pathway protein-like protein; K02450 general secretion pathway protein A Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Peptidoglycan-binding domain 1 protein id=4387050 bin=GWA2_OP3_53_43 species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
exeA; peptidoglycan-binding ATPase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11992..12546
DNA (555bp) protein (185aa)
Acetyltransferase, ribosomal protein N-acetylase n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UB22_9CHRO
acetyltransferase, ribosomal protein N-acetylase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
acetyltransferase, ribosomal protein N-acetylase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12553..15036
DNA (2484bp) protein (828aa)
Putative metal-dependent phosphohydrolase n=1 Tax=uncultured Acidobacteria bacterium cosmid p2H8 RepID=B1NME4_9BACT
diguanylate cyclase (GGDEF) domain Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
putative metal-dependent phosphohydrolase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15169..15786
DNA (618bp) protein (206aa)
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Uncharacterized protein n=1 Tax=Streptomycetaceae bacterium MP113-05 RepID=V6KXT3_9ACTO
DNA polymerase LigD, ligase domain protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15747..16976
DNA (1230bp) protein (410aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037A653B
DNA ligase D
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_trna_2
unknown

Not on your lists

17042..17115
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_trna_3
unknown

Not on your lists

17134..17207
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_trna_4
unknown

Not on your lists

17249..17321
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17260..18243)
DNA (984bp) protein (328aa)
Putative Phage integrase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8R6_9BACT
putative phage integrase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
putative phage integrase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18585..19292
DNA (708bp) protein (236aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19365..19943
DNA (579bp) protein (193aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20058..20390
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXD1_ROSS1
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20394..20636
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXD2_ROSS1
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20668..21339
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM21 RepID=J2NJ34_9PSED
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21407..21808
DNA (402bp) protein (134aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

22040..23476
DNA (1437bp) protein (479aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

23486..24313
DNA (828bp) protein (276aa)
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
truA; tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] id=12555820 bin=CNBR_ACIDO species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tRNA pseudouridine synthase A
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(24365..25408)
DNA (1044bp) protein (348aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12555419 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(25422..26099)
DNA (678bp) protein (226aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
dienelactone hydrolase-like enzyme (EC:3.1.1.45)
Dienelactone hydrolase-like enzyme n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEN1_CHLTF
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

26314..27117
DNA (804bp) protein (268aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

27124..29412
DNA (2289bp) protein (763aa)
capsular exopolysaccharide family protein (EC:2.7.10.2) id=12556216 bin=CNBR_ACIDO species=Lamprocystis purpurea genus=Lamprocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Protein-tyrosine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Protein-tyrosine kinase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_5639_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

29546..30775
DNA (1230bp) protein (410aa)
membrane protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
membrane protein id=12556199 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
membrane protein
Displaying items 1-30 of 50 in total

View Taxonomy