ggKbase home page

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(89..820)
DNA (732bp) protein (244aa)
Haloacid dehalogenase domain protein hydrolase n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S143_FERPA
haloacid dehalogenase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
haloacid dehalogenase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(878..2611)
DNA (1734bp) protein (578aa)
hypothetical protein; K01007 pyruvate, water dikinase [EC:2.7.9.2] id=14628754 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2616..3758)
DNA (1143bp) protein (381aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] id=14628752 bin=bin8_Chloro species=Thermococcus onnurineus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=bin8_Chloro organism_group=Chloroflexi
phosphoenolpyruvate synthase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3976..4527)
DNA (552bp) protein (184aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Glyoxalase/bleomycin resistance protein/dioxygenase id=4141959 bin=GWA2_Methylomirabilis_73_35 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glyoxalase/bleomycin resistance protein/dioxygenase
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4534..5433)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LQZ1_HALO1
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
LysR family transcriptional regulator
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5576..6643
DNA (1068bp) protein (356aa)
amidohydrolase 2; K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
amidohydrolase 2; K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45] id=14628753 bin=bin8_Chloro species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
amidohydrolase 2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

6803..7357
DNA (555bp) protein (185aa)
nuoJ; NADH-quinone oxidoreductase membrane subunit J (EC:1.6.99.5); K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nuoJ; NADH-quinone oxidoreductase membrane subunit J (EC:1.6.99.5)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 id=2097100 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7357..7659
DNA (303bp) protein (101aa)
nuoK; NADH-quinone oxidoreductase membrane subunit K (EC:1.6.99.5); K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nuoK; NADH-quinone oxidoreductase membrane subunit K (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit K id=3426629 bin=GWF2_Nitrospirae_44_13 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7668..9152
DNA (1485bp) protein (495aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05568 multicomponent Na+:H+ antiporter subunit D Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cation:proton antiporter n=1 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B6DEAF
monovalent cation/H+ antiporter subunit D
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9149..9412
DNA (264bp) protein (88aa)
membrane protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000360BA56
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9402..11165
DNA (1764bp) protein (588aa)
cation:proton antiporter n=1 Tax=Rhizobium mongolense RepID=UPI0003B2FC97
NADH dehydrogenase I subunit M; K05568 multicomponent Na+:H+ antiporter subunit D Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NADH dehydrogenase ubiquinone/plastoquinone protein
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11162..12643
DNA (1482bp) protein (494aa)
proton-translocating NADH-quinone oxidoreductase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein n=2 Tax=Bacteria RepID=UPI00036E574F
proton-translocating NADH-quinone oxidoreductase subunit M
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12640..14049
DNA (1410bp) protein (470aa)
proton-translocating NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nuoN2; NADH-quinone oxidoreductase subunit N 2 (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit N id=3426635 bin=GWF2_Nitrospirae_44_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14118..14471
DNA (354bp) protein (118aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NADH dehydrogenase I subunit A n=1 Tax=uncultured prokaryote RepID=H5SP89_9ZZZZ
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14600..15100
DNA (501bp) protein (167aa)
NADH dehydrogenase subunit B (EC:1.6.99.5); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NADH-quinone oxidoreductase subunit B id=4828150 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NADH dehydrogenase subunit B
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15097..15678
DNA (582bp) protein (194aa)
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.5.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nuoC1; NADH dehydrogenase (ubiquinone) (EC:1.6.5.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=14627531 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.5.3)
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15696..17057
DNA (1362bp) protein (454aa)
nuoD; NADH dehydrogenase I subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NADH-quinone oxidoreductase subunit D id=2999356 bin=GWA2_OP3_52_12 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
nuoD; NADH dehydrogenase I subunit D
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17054..18850
DNA (1797bp) protein (599aa)
NADH-quinone oxidoreductase subunit F n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B34E5F
nuoF; NADH-quinone oxidoreductase chain F Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nuoF; NADH-quinone oxidoreductase chain F
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18838..20430
DNA (1593bp) protein (531aa)
NADH dehydrogenase subunit G n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B681AB
Molybdopterin oxidoreductase Fe4S4 region Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Molybdopterin oxidoreductase Fe4S4 region
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20427..21527
DNA (1101bp) protein (367aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit H n=1 Tax=uncultured bacterium RepID=D6CJW5_9BACT
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_8285_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21527..22183
DNA (657bp) protein (219aa)
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
NADH dehydrogenase subunit I (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit I n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B6348D
Displaying 21 items

View Taxonomy