ggKbase home page

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_rifcsplowo2_12_scaffold_11903_5

Organism: Acidobacteria bacterium RIFCSPLOWO2_12_FULL_65_11

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(2673..3233)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 186.0
  • Bit_score: 372
  • Evalue 3.20e-100
ECF subfamily RNA polymerase sigma-24 factor id=12556267 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 59.5
  • Coverage: 185.0
  • Bit_score: 212
  • Evalue 3.00e-52
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 53.7
  • Coverage: 175.0
  • Bit_score: 190
  • Evalue 4.60e-46

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 561
ATGACCGACGCCCACCAGTTCGAGGCGTTCGTGCGGAGGTATCAGGACATGGTGTTCGCCACTGCGGTCCGGCTGCTCGGCAACCCGACCGAGGCCGAGGATGTGGCGCAAACCGTGTTCTTGCGGGCGTTCCAGCGCTTTGACGCGATTGGCTCGAGCCCGACGGCCGCCGGGTGGCTGAAGACCGTGACGCGGAATGCCTGTCTCAATCACTTGTCCCGCTACCGGTCGCGCTGGCGGTTCTTCAGCGAACTCGCGCGCGCCGATGCCTCGACGGCCGAGAGCCCTGGGAGCCCTGGGAACAATGAAGAGATGGCGCTCCTGTCCGACAGGTCGCCGGCCGTGGAACTGGAGGAGGCCGACCGACGCGAGCACCTGGAGCGGGCGCTCCGCCGGCTGCCCGACCACCAGCGGGTACCGCTCGTGCTCTTCCATTTCGAAGAGGCAAGTTACCAGGAGATTGCCGAGACGCTCGGGGTGTCGGTGGGCAAAGTGAAGACAGACATCCATCGAGGCCGCGAGGCGCTCAGAACACTGCTGCCCGACTATGCGCCCCGTTAA
PROTEIN sequence
Length: 187
MTDAHQFEAFVRRYQDMVFATAVRLLGNPTEAEDVAQTVFLRAFQRFDAIGSSPTAAGWLKTVTRNACLNHLSRYRSRWRFFSELARADASTAESPGSPGNNEEMALLSDRSPAVELEEADRREHLERALRRLPDHQRVPLVLFHFEEASYQEIAETLGVSVGKVKTDIHRGREALRTLLPDYAPR*