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RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(2..250)
DNA (249bp) protein (83aa)
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Alkalibacillus haloalkaliphilus RepID=UPI0002EAF139
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(432..1079)
DNA (648bp) protein (216aa)
Putative uncharacterized protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=5095891 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

1242..1469
DNA (228bp) protein (76aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

1469..1669
DNA (201bp) protein (67aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

1946..2830
DNA (885bp) protein (295aa)
ABC-type metal ion transport system, periplasmic component/surface adhesin n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WA40_DESOD
ABC-type metal ion transport system, periplasmic component/surface adhesin; K09815 zinc transport system substrate-binding protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
metal ion ABC transporter substrate-binding protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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2834..3493
DNA (660bp) protein (220aa)
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ABC-type Mn/Zn transport system, ATPase component n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0K068_9FIRM
ABC transporter
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

3490..4296
DNA (807bp) protein (269aa)
ABC-3 protein n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W434_DESAS
ABC transporter; K09816 zinc transport system permease protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ABC transporter
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(4308..5045)
DNA (738bp) protein (246aa)
two component transcriptional regulator, arac family Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
AraC family transcriptional regulator id=3241549 bin=GWC2_Elusimicrobia_51_8 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
two component transcriptional regulator, arac family
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(5129..5554)
DNA (426bp) protein (142aa)
desulfoferrodoxin ferrous iron-binding region; K05919 superoxide reductase [EC:1.15.1.2] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Desulfoferrodoxin ferrous iron-binding region id=4054855 bin=GWF2_OP3_38_59 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
desulfoferrodoxin ferrous iron-binding region
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(5591..6040)
DNA (450bp) protein (150aa)
id=4054856 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
id=4054856 bin=GWF2_OP3_38_59 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(6316..6708)
DNA (393bp) protein (131aa)
response regulator receiver protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
response regulator receiver protein
Response regulator containing sigma 54 interaction domain id=4260205 bin=GWF2_OP9_related_35_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(6705..8159)
DNA (1455bp) protein (485aa)
PAS/PAC domain-containing sensor histidine kinase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
PAS/PAC sensor signal transduction histidine kinase id=4128196 bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PAS/PAC domain-containing sensor histidine kinase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(8218..8364)
DNA (147bp) protein (49aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(8615..9226)
DNA (612bp) protein (204aa)
TrpR binding protein WrbA; K03809 Trp repressor binding protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Flavoprotein WrbA id=4828363 bin=GWC2_Syntrophus__56_31 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
wrbA; NAD(P)H:quinone oxidoreductase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

9614..10156
DNA (543bp) protein (181aa)
ABC transporter; K09817 zinc transport system ATP-binding protein [EC:3.6.3.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ABC transporter related n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W433_DESAS
ABC transporter
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

10140..11867
DNA (1728bp) protein (576aa)
sensory box protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Multi-sensor hybrid histidine kinase id=2588584 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
sensory box protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

11958..12638
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XR11_FLAIG
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12664..13080
DNA (417bp) protein (139aa)
id=4260110 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
id=4260110 bin=GWF2_OP9_related_35_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

13109..13258
DNA (150bp) protein (50aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein id=5079310 bin=GWF1_Burkholderiales_GWF1_66_17 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

13275..14057
DNA (783bp) protein (261aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_1431_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(14158..14775)
DNA (618bp) protein (206aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Displaying 21 items

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