ggKbase home page

08E140C01_scaffold_718_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_scaffold_718_curated_1
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(158..1447)
DNA (1290bp) protein (430aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CPA8_DESK7
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:AEG14199.1}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
08E140C01_scaffold_718_curated_2
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1440..1940)
DNA (501bp) protein (167aa)
TRAP transporter, DctQ-like membrane protein n=2 Tax=Oscillibacter RepID=U2SLL9_9FIRM
TRAP transporter, DctQ-like membrane protein {ECO:0000313|EMBL:ERK66157.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
C4-dicarboxylate transport system permease small protein
08E140C01_scaffold_718_curated_3
unknown

Not on your lists

comp(2007..3254)
DNA (1248bp) protein (416aa)
TRAP dicarboxylate transporter, DctP subunit id=3905254 bin=GWB1_Spirochaetes_59_5 species=unknown genus=Marinomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
TRAP dicarboxylate transporter subunit DctP
08E140C01_scaffold_718_curated_4
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3297..4379)
DNA (1083bp) protein (361aa)
Glycerol dehydrogenase and related enzymes (EC:1.1.1.6)
3-dehydroquinate synthase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGQ8_9FIRM rbh
3-dehydroquinate synthase {ECO:0000313|EMBL:EDS09156.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
08E140C01_scaffold_718_curated_5
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4442..5359)
DNA (918bp) protein (306aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGR1_9FIRM rbh
08E140C01_scaffold_718_curated_6
unknown

Not on your lists

5656..6369
DNA (714bp) protein (238aa)
GntR domain protein id=3453443 bin=GWC2_Spirochaete_52_13 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
GntR family transcriptional regulator
08E140C01_scaffold_718_curated_7
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6380..7273)
DNA (894bp) protein (298aa)
Dihydrodipicolinate synthase (EC:4.3.3.7) rbh
Dihydrodipicolinate synthase {ECO:0000313|EMBL:CCP26765.1}; EC=4.3.3.7 {ECO:0000313|EMBL:CCP26765.1};; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
Dihydrodipicolinate synthase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LXK9_TEPAE rbh
08E140C01_scaffold_718_curated_8
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

Not on your lists

comp(7691..8674)
DNA (984bp) protein (328aa)
Putative dehydrogenase n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TPE8_9FIRM
Putative dehydrogenase {ECO:0000313|EMBL:CDC71694.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
putative oxidoreductase
08E140C01_scaffold_718_curated_9
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(8665..9471)
DNA (807bp) protein (269aa)
idnO; short-chain dehydrogenase/reductase SDR; K00046 gluconate 5-dehydrogenase [EC:1.1.1.69]
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI0003793DDD rbh
KR domain protein {ECO:0000313|EMBL:ERF59719.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
08E140C01_scaffold_718_curated_10
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(9531..10796)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036FA760 rbh
TRAP transporter, DctM subunit {ECO:0000313|EMBL:ERF59699.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
TRAP transporter, DctM subunit rbh
08E140C01_scaffold_718_curated_11
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(10798..11316)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036B9686
TRAP transporter, DctQ-like membrane protein {ECO:0000313|EMBL:ERF59731.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
tripartite ATP-independent periplasmic transporter DctQ
08E140C01_scaffold_718_curated_12
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(11414..12406)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00037C264A rbh
TRAP transporter solute receptor, DctP family {ECO:0000313|EMBL:ERF59702.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
TRAP-type transport system, periplasmic protein
08E140C01_scaffold_718_curated_13
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

12558..13217
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036839D7
FCD domain protein {ECO:0000313|EMBL:ERF59718.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
transcriptional regulator
08E140C01_scaffold_718_curated_14
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

13225..14115
DNA (891bp) protein (297aa)
nanA; N-acetylneuraminate lyase (EC:4.1.3.3)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00037682DF rbh
Putative N-acetylneuraminate lyase {ECO:0000313|EMBL:ERF59730.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
08E140C01_scaffold_718_curated_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14306..14941)
DNA (636bp) protein (212aa)
Putative sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KUQ9_CLOBM
sigma-54 dependent transcriptional regulator
Putative sigma-54 dependent transcriptional regulator {ECO:0000313|EMBL:ACA54178.1}; TaxID=498214 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Loch Maree / Type A3).;"
08E140C01_scaffold_718_curated_16
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14999..16483)
DNA (1485bp) protein (495aa)
glycerol kinase (EC:2.7.1.30); K00864 glycerol kinase [EC:2.7.1.30] rbh
Glycerol kinase {ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|SAAS:SAAS00029376};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Glycerol kinase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZY43_MAHA5 rbh
08E140C01_scaffold_718_curated_17
Prevotella sp. CAG:1058, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16508..17455)
DNA (948bp) protein (316aa)
transketolase subunit B (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] rbh
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:1058 RepID=R5CKD6_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCX64186.1}; TaxID=1262918 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1058.;"
08E140C01_scaffold_718_curated_18
Paenibacillus sp. Y412MC10, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17448..18290)
DNA (843bp) protein (281aa)
transketolase domain-containing protein; K00615 transketolase [EC:2.2.1.1] rbh
transketolase n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00036C7999 rbh
Transketolase domain protein {ECO:0000313|EMBL:ACX65271.1}; TaxID=481743 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Geobacillus sp. (strain Y412MC10).;"
08E140C01_scaffold_718_curated_19

Not on your lists

comp(18287..20071)
DNA (1785bp) protein (595aa)
SIS domain-containing protein n=2 Tax=Listeria innocua RepID=E3YW34_LISIO
Marine sediment metagenome DNA, contig: S01H4_S14840 {ECO:0000313|EMBL:GAH12756.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
08E140C01_scaffold_718_curated_20
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20099..20965)
DNA (867bp) protein (289aa)
Transcriptional regulator, RpiR family n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A0U7_MAHA5
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:AEE96993.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
08E140C01_scaffold_718_curated_21
unknown

Not on your lists

comp(20971..22473)
DNA (1503bp) protein (501aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1I4_9CLOT rbh
xylB; xylulose kinase rbh
08E140C01_scaffold_718_curated_22
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22486..23772)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A357_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EMZ20893.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
SAF domain-containing protein rbh
08E140C01_scaffold_718_curated_23
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23803..24834)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A999_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EMZ20894.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
putative arabitol-phosphate dehydrogenase
08E140C01_scaffold_718_curated_24
Prevotella bryantii, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25085..26506
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Prevotella bryantii B14 RepID=D8DVY0_PREBR rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI72425.1}; TaxID=752555 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella bryantii B14.;"
hypothetical protein rbh
08E140C01_scaffold_718_curated_25
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(26677..27561)
DNA (885bp) protein (295aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NMF2_MARHT
xylose isomerase domain-containing protein TIM barrel
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AEB11840.1}; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
08E140C01_scaffold_718_curated_26

Not on your lists

comp(27558..28076)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Treponema maltophilum ATCC 51939 RepID=S3K1Z9_TREMA
Marine sediment metagenome DNA, contig: S01H1_S29889 {ECO:0000313|EMBL:GAG38612.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
08E140C01_scaffold_718_curated_27
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(28073..29122)
DNA (1050bp) protein (350aa)
Putative zinc-containing alcohol dehydrogenase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7N4_CALAS rbh
putative zinc-containing alcohol dehydrogenase rbh
Putative zinc-containing alcohol dehydrogenase {ECO:0000313|EMBL:BAM01272.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
08E140C01_scaffold_718_curated_28
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(29119..30417)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7N3_CALAS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAM01271.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
08E140C01_scaffold_718_curated_29
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(30429..31973)
DNA (1545bp) protein (515aa)
xylB; xylulose kinase; K00854 xylulokinase [EC:2.7.1.17] rbh
Xylulose kinase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7N6_CALAS rbh
Xylulose kinase {ECO:0000313|EMBL:BAM01274.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
08E140C01_scaffold_718_curated_30
unknown

Not on your lists

comp(31988..32968)
DNA (981bp) protein (327aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1J4_9CLOT rbh
inner-membrane translocator rbh
Displaying items 1-30 of 36 in total

View Taxonomy