ggKbase home page

RBG_16_scaffold_80553_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_scaffold_80553_curated_1
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..271
DNA (270bp) protein (90aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase I n=1 Tax=Desulfovibrio longus RepID=UPI0003B478ED
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_2
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262..960
DNA (699bp) protein (233aa)
trmFO; tRNA:M(5)U-54 methyltransferase (EC:2.1.1.74); K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Enterococcus caccae ATCC BAA-1240 RepID=R3WRC7_9ENTE
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_3
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

960..1577
DNA (618bp) protein (206aa)
gid; tRNA (uracil-5-)-methyltransferase Gid; K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=TRMFO_SYNAS
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_4
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1673..2881)
DNA (1209bp) protein (403aa)
Type IV pilus inner membrane protein PilC n=2 Tax=Geobacter metallireducens RepID=Q39VU5_GEOMG rbh
type II secretion system protein; K02653 type IV pilus assembly protein PilC rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_5
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2947..3375)
DNA (429bp) protein (143aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-]
Protease n=1 Tax=planctomycete KSU-1 RepID=I3IIE3_9PLAN
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_6
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3685..4404)
DNA (720bp) protein (240aa)
Endopeptidase id=4699693 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_7
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4424..4792)
DNA (369bp) protein (123aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A1Y8_MAHA5
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_8
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5274..5462
DNA (189bp) protein (63aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_9
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5493..5735
DNA (243bp) protein (81aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_10
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5820..6242)
DNA (423bp) protein (141aa)
Winged-helix transcriptional response regulator n=2 Tax=Geobacter sulfurreducens RepID=D7AEY9_GEOSK
winged-helix transcriptional response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_11
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6683..6967
DNA (285bp) protein (95aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LR31_SYNAS
cytoplasmic protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_12
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7270..7545
DNA (276bp) protein (92aa)
30S ribosomal protein S20 id=3407529 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_13
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7546..8064)
DNA (519bp) protein (173aa)
Putative uncharacterized protein id=3501437 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_14
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8112..10580)
DNA (2469bp) protein (823aa)
leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] rbh
Leucine--tRNA ligase n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7ALB4_GEOSK rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_15
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10658..11053)
DNA (396bp) protein (132aa)
argG; argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5]
Argininosuccinate synthase id=4481316 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_16
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11198..11386)
DNA (189bp) protein (63aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_80553_curated_17
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11978..12331)
DNA (354bp) protein (118aa)
ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3]
Ornithine carbamoyltransferase n=1 Tax=Leptonema illini DSM 21528 RepID=H2CAY3_9LEPT
Tax=RBG_16_Deltaproteobacteria_42_7_curated
Displaying 17 items

View Taxonomy