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rifoxyb2_full_scaffold_3778_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifoxyb2_full_scaffold_3778_curated_1
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2..121
-----------------
DNA (120bp)
protein (40aa)
50S ribosomal protein L14 id=1815071 bin=GWB2_Deltaproteobacteria_65_81 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_2
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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118..477
-----------------
DNA (360bp)
protein (120aa)
50S ribosomal protein L24 id=1815066 bin=GWB2_Deltaproteobacteria_65_81 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
LSU ribosomal protein L24P
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_3
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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519..1058
-----------------
DNA (540bp)
protein (180aa)
50S ribosomal protein L5 id=4430912 bin=GWA2_Deltaproteo_65_63 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria rbh
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_4
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1079..1264
-----------------
DNA (186bp)
protein (62aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=14623281 bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
30S ribosomal protein S14P; K02954 small subunit ribosomal protein S14
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
rifoxyb2_full_scaffold_3778_curated_5
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1274..1684
-----------------
DNA (411bp)
protein (137aa)
30S ribosomal protein S8 id=2693021 bin=GWC2_Deltaproteobacteria_66_88 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_6
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1937..2254
-----------------
DNA (318bp)
protein (106aa)
50S ribosomal protein L6 id=2693018 bin=GWC2_Deltaproteobacteria_66_88 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_7
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2295..2663
-----------------
DNA (369bp)
protein (123aa)
50S ribosomal protein L18 id=2693012 bin=GWC2_Deltaproteobacteria_66_88 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_8
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3043..3204
-----------------
DNA (162bp)
protein (54aa)
30S ribosomal protein S5 id=2693007 bin=GWC2_Deltaproteobacteria_66_88 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_9
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3201..3395
-----------------
DNA (195bp)
protein (65aa)
50S ribosomal protein L30 id=1815028 bin=GWB2_Deltaproteobacteria_65_81 species=Acidithiobacillus thiooxidans genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
rifoxyb2_full_scaffold_3778_curated_10
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3392..3832
-----------------
DNA (441bp)
protein (147aa)
50S ribosomal protein L15 id=1815023 bin=GWB2_Deltaproteobacteria_65_81 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_11
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3837..5144
-----------------
DNA (1308bp)
protein (436aa)
Protein translocase subunit SecY id=2692989 bin=GWC2_Deltaproteobacteria_66_88 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria rbh
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_12
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5149..5793
-----------------
DNA (645bp)
protein (215aa)
adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase id=4430904 bin=GWA2_Deltaproteo_65_63 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria rbh
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
rifoxyb2_full_scaffold_3778_curated_13
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5763..6077)
-----------------
DNA (315bp)
protein (105aa)
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_14
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6105..6398)
-----------------
DNA (294bp)
protein (98aa)
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_15
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

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6584..6802
-----------------
DNA (219bp)
protein (73aa)
Translation initiation factor IF-1 id=1815009 bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
translation initiation factor IF-1; K02518 translation initiation factor IF-1
Tax=CG_Delta_02
rifoxyb2_full_scaffold_3778_curated_16
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6977..7360
-----------------
DNA (384bp)
protein (128aa)
SSU ribosomal protein S13P id=4430900 bin=GWA2_Deltaproteo_65_63 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
rifoxyb2_full_scaffold_3778_curated_17
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7416..7541
-----------------
DNA (126bp)
protein (42aa)
30S ribosomal protein S11 id=4430899 bin=GWA2_Deltaproteo_65_63 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
Displaying 17 items

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