ggKbase home page

RBG_13_scaffold_1819_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_scaffold_1819_curated_1
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(1..201)
DNA (201bp) protein (67aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_2
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(215..1045)
DNA (831bp) protein (277aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_3
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

1085..1228
DNA (144bp) protein (48aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_4
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(1199..1438)
DNA (240bp) protein (80aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_5
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(2248..2931)
DNA (684bp) protein (228aa)
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6T1_9FIRM id=725434 bin=RAAC2_WWE3 species=Anaerofustis stercorihominis genus=Anaerofustis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC2_WWE3 organism_group=WWE3
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_6
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

3081..3824
DNA (744bp) protein (248aa)
id=5087713 bin=OP11_3 species=OP11_3 genus=OP11_3 taxon_order=OP11_3 taxon_class=OP11_3 phylum=OP11 tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome rbh
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_7
unknown

Not on your lists

comp(4239..4391)
DNA (153bp) protein (51aa)

This feature has no annotations

RBG_13_scaffold_1819_curated_8
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

5158..5577
DNA (420bp) protein (140aa)
ABC transporter ATP-binding protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
mag:amb3385 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components; K06147 ATP-binding cassette, subfamily B, bacterial id=75276 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_9
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

5579..6190
DNA (612bp) protein (204aa)
Ham1 family protein id=1916052 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Xanthosine triphosphate pyrophosphatase
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_10
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

6215..7042
DNA (828bp) protein (276aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_11
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(6989..7597)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003745418
HhH-GPD family protein; K07457 endonuclease III related protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_12
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(7613..8221)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F476_9BACT
DEAD/DEAH box helicase; K06877 DEAD/DEAH box helicase domain-containing protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_13
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

8335..9282
DNA (948bp) protein (316aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DBE8_9BACT rbh
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_14
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(9409..10680)
DNA (1272bp) protein (424aa)
UvrD/REP helicase family protein id=5102207 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria) rbh
UvrD/REP helicase family protein rbh
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_15
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(10681..10911)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JG14_9ARCH
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_16
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(10935..11375)
DNA (441bp) protein (147aa)
PEBP family protein; K06910 id=5096015 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
PEBP family protein; K06910
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_17
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(11507..11749)
DNA (243bp) protein (81aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_18
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(11806..12783)
DNA (978bp) protein (326aa)
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HT79_9FIRM rbh
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_19
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(12801..13379)
DNA (579bp) protein (193aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_20
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

13413..13892
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E806_9BACT
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_21
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(13889..14068)
DNA (180bp) protein (60aa)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_22
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(14580..15803)
DNA (1224bp) protein (408aa)
bbe:BBR47_15080 hypothetical protein; K02004 id=68237 bin=ACD48 species=ACD48 genus=ACD48 taxon_order=ACD48 taxon_class=ACD48 phylum=OP11 tax=ACD48 organism_group=OP11 (Microgenomates) organism_desc=OP11 rbh
antimicrobial peptide ABC transporter permease; K02004 putative ABC transport system permease protein rbh
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_23
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(15800..16513)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AM92_9BACT rbh
ABC transporter; K02003 putative ABC transport system ATP-binding protein
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_24
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(16510..16815)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B2E7_9BACT
secretion protein HlyD
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_25
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(17482..18483)
DNA (1002bp) protein (334aa)
two-component sensor histidine kinase (EC:2.7.3.-) id=5085083 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2 rbh
putative Histidine kinase (EC:2.7.13.3)
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_26
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(18485..19159)
DNA (675bp) protein (225aa)
OmpR family response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR id=5085084 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
two component transcriptional regulator, winged helix family; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_27
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(19237..19563)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B0Q7_9BACT
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_28
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(19566..20540)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium SCGC AAA011-J08 RepID=UPI00037D5547
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_29
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(20814..21233)
DNA (420bp) protein (140aa)
id=5087785 bin=OP11_3 species=OP11_3 genus=OP11_3 taxon_order=OP11_3 taxon_class=OP11_3 phylum=OP11 tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
RBG_13_scaffold_1819_curated_30
RBG_13_OP11_Shapirobacteria_44_7_curated, Shapirobacteria, Microgenomates, Bacteria

Not on your lists

comp(21208..21432)
DNA (225bp) protein (75aa)
Transcriptional regulator, XRE family n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KRB9_ARCVS id=5087784 bin=OP11_3 species=Archaeoglobus veneficus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
XRE family transcriptional regulator; K07729 putative transcriptional regulator
Tax=RBG_13_OP11_Shapirobacteria_44_7_curated
Displaying items 1-30 of 32 in total

View Taxonomy