ggKbase home page

RBG_13_OP3_44_8_RBG_13_scaffold_3616

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_OP3_44_8_RBG_13_scaffold_3616_1
unknown

Not on your lists

1..300
DNA (300bp) protein (100aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase id=2883665 bin=GWF2_OP3_43_52 species=Spirochaeta africana genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
1-acyl-sn-glycerol-3-phosphate acyltransferase
RBG_13_OP3_44_8_RBG_13_scaffold_3616_2
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

297..1073
DNA (777bp) protein (259aa)
RNA-binding domain-containing protein id=14425857 bin=bin1_lowGC species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin1_lowGC organism_group=Unknown_CP
rbpE; putative RNA-binding protein rbpE
Putative RNA-binding protein rbpE {ECO:0000313|EMBL:CCO24802.1}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio hydrothermalis AM13 = DSM 14728.;"
RBG_13_OP3_44_8_RBG_13_scaffold_3616_3
unknown

Not on your lists

1018..2082
DNA (1065bp) protein (355aa)
id=2881255 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_3616_4
unknown

Not on your lists

2105..2764
DNA (660bp) protein (220aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_5
unknown

Not on your lists

2899..3381
DNA (483bp) protein (161aa)
Multi-sensor hybrid histidine kinase id=2880750 bin=GWF2_OP3_43_52 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
multi-sensor hybrid histidine kinase
RBG_13_OP3_44_8_RBG_13_scaffold_3616_6
unknown

Not on your lists

comp(3694..3861)
DNA (168bp) protein (56aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_7
unknown

Not on your lists

4442..4855
DNA (414bp) protein (138aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase domain protein id=2883668 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_3616_8
unknown

Not on your lists

4852..5295
DNA (444bp) protein (148aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_9
unknown

Not on your lists

5444..5923
DNA (480bp) protein (160aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_10
unknown

Not on your lists

5994..8099
DNA (2106bp) protein (702aa)
Putative signal transduction histidine kinase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W5E3_UNCMA
putative signal transduction histidine kinase
RBG_13_OP3_44_8_RBG_13_scaffold_3616_11
unknown

Not on your lists

8092..8475
DNA (384bp) protein (128aa)
Response regulator receiver protein id=3698112 bin=GWF2_Lentisphaerae_49_21 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
response regulator receiver protein; K02490 two-component system, response regulator, stage 0 sporulation protein F
RBG_13_OP3_44_8_RBG_13_scaffold_3616_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8496..9323
DNA (828bp) protein (276aa)
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y680_NITMU
RBG_13_OP3_44_8_RBG_13_scaffold_3616_13
unknown

Not on your lists

9427..10005
DNA (579bp) protein (193aa)
Rubrerythrin id=4168276 bin=GWF2_OP3_43_52 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rubrerythrin
RBG_13_OP3_44_8_RBG_13_scaffold_3616_14
unknown

Not on your lists

10006..10827
DNA (822bp) protein (274aa)
Uncharacterized protein id=3687626 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
RBG_13_OP3_44_8_RBG_13_scaffold_3616_15
unknown

Not on your lists

11018..12124
DNA (1107bp) protein (369aa)
Uncharacterized protein id=3317115 bin=GWC2_OP3-like_45_7 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
hypothetical protein
RBG_13_OP3_44_8_RBG_13_scaffold_3616_16
unknown

Not on your lists

comp(12443..12751)
DNA (309bp) protein (103aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_17
unknown

Not on your lists

12978..13367
DNA (390bp) protein (130aa)
Ammonium transporter id=2246684 bin=GWB2_CP_45_9 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
ammonium transporter; K03320 ammonium transporter, Amt family
RBG_13_OP3_44_8_RBG_13_scaffold_3616_18
unknown

Not on your lists

13444..13785
DNA (342bp) protein (114aa)
Nitrogen regulatory protein PII id=4236239 bin=GWC2_Planctomycetes_45_44 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1
RBG_13_OP3_44_8_RBG_13_scaffold_3616_19
unknown

Not on your lists

13788..13880
DNA (93bp) protein (31aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_20
unknown

Not on your lists

13954..16149
DNA (2196bp) protein (732aa)
Glutamine synthetase catalytic region id=4123540 bin=GWF2_OP3_43_52 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
glutamine synthetase
RBG_13_OP3_44_8_RBG_13_scaffold_3616_21
unknown

Not on your lists

comp(16721..16849)
DNA (129bp) protein (43aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_22
unknown

Not on your lists

comp(16855..17157)
DNA (303bp) protein (101aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_23
unknown

Not on your lists

comp(17117..17449)
DNA (333bp) protein (111aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_24
unknown

Not on your lists

comp(17704..18099)
DNA (396bp) protein (132aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_3616_25

Not on your lists

comp(18646..18948)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EE04_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE16731.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RBG_13_OP3_44_8_RBG_13_scaffold_3616_26
Prevotella sp. CAG:1124, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18988..19341)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Prevotella sp. CAG:1124 RepID=R5KV47_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCY64901.1}; TaxID=1262920 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1124.;"
RBG_13_OP3_44_8_RBG_13_scaffold_3616_27
unknown

Not on your lists

20485..21930
DNA (1446bp) protein (482aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.14 1.4.1.13)
Glutamate synthase, small subunit id=4321231 bin=GWC2_OP3_44_8 species=Clostridium ljungdahlii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RBG_13_OP3_44_8_RBG_13_scaffold_3616_28

Not on your lists

23519..23710
DNA (192bp) protein (64aa)
phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2]
Phosphoenolpyruvate synthase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQG3_SYNAS
Marine sediment metagenome DNA, contig: S03H2_S11251 {ECO:0000313|EMBL:GAH75870.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 28 items

View Taxonomy