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ACD3_14

Alias: ACD3_372.27626.77

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_14_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(100..942)
DNA (843bp) protein (281aa)
putative arogenate/prephenate dehydrogenase (EC:1.3.1.-)
PDH (db=HMMPfam db_id=PF02153 from=43 to=250 evalue=7.6e-24 interpro_id=IPR003099 interpro_description=Prephenate dehydrogenase GO=Molecular Function: prephenate dehydrogenase (NADP+) activity (GO:0004665), Biological Process: tyrosine biosynthetic process (GO:0006571))
6-phosphogluconate dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF48179 from=147 to=258 evalue=2.0e-09 interpro_id=IPR008927 interpro_description=6-phosphogluconate dehydrogenase, C-terminal-like GO=Molecular Function: oxidoreductase activity (GO:0016491))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=41 to=146 evalue=4.4e-09)
later step (from phenate) in phenylalanine, tyrosine and tryptophan biosynthesis Jill Banfield (11/15/12)
ACD3_14_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(952..2253)
DNA (1302bp) protein (434aa)
seg (db=Seg db_id=seg from=190 to=201)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=35 to=427 evalue=2.9e-15 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
no description (db=Gene3D db_id=G3DSA:3.40.640.10 from=108 to=310 evalue=1.9e-08 interpro_id=IPR015421 interpro_description=Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: pyridoxal phosphate binding (GO:0030170))
Aminotran_1_2 (db=HMMPfam db_id=PF00155 from=109 to=353 evalue=1.4e-07 interpro_id=IPR004839 interpro_description=Aminotransferase, class I/classII GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: transferase activity, transferring nitrogenous groups (GO:0016769), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACD3_14_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2260..3072)
DNA (813bp) protein (271aa)
prephenate dehydratase (EC:4.2.1.51)
seg (db=Seg db_id=seg from=141 to=152)
PREPHENATE DEHYDRATASE (P PROTEIN) (db=HMMPanther db_id=PTHR21022 from=1 to=270 evalue=4.3e-67)
PDT (db=HMMPfam db_id=PF00800 from=6 to=181 evalue=3.7e-43 interpro_id=IPR001086 interpro_description=Prephenate dehydratase GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
ACD3_14_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

3460..5367
DNA (1908bp) protein (636aa)
3460..5367 + (rbs_motif=TTAA rbs_spacer=6bp)
hypothetical protein Tax=ACD3
ACD3_14_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(5412..5969)
DNA (558bp) protein (186aa)
hypothetical protein (db=KEGG evalue=2.0e-14 bit_score=81.6 identity=32.81 coverage=67.2043010752688)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=28 to=169 evalue=1.6e-10)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR13610 from=10 to=163 evalue=6.9e-05)
ACD3_14_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(5990..6484)
DNA (495bp) protein (165aa)
CYTH-like phosphatases (db=superfamily db_id=SSF55154 from=1 to=164 evalue=8.8e-12 interpro_id=IPR004206 interpro_description=mRNA capping enzyme, beta subunit GO=Molecular Function: polynucleotide 5'-phosphatase activity (GO:0004651), Molecular Function: protein binding (GO:0005515), Biological Process: mRNA capping (GO:0006370), Cellular Component: mRNA cap methyltransferase complex (GO:0031533))
no description (db=Gene3D db_id=G3DSA:2.40.320.10 from=3 to=164 evalue=3.2e-05)
CYTH-like phosphatases 1..164 Tax=ACD3
ACD3_14_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

6635..8128
DNA (1494bp) protein (498aa)
hypothetical protein
seg (db=Seg db_id=seg from=382 to=394)
seg (db=Seg db_id=seg from=312 to=324)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
ACD3_14_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

8279..8539
DNA (261bp) protein (87aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions 20..42 Tax=ACD3
ACD3_14_9
unknown

Not on your lists

comp(8640..9458)
DNA (819bp) protein (273aa)
hypothetical protein
hypothetical protein GobsU_15693 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C494F (db=UNIREF evalue=2.0e-27 bit_score=125.0 identity=45.04 coverage=47.6190476190476)
DUF1768 (db=HMMPfam db_id=PF08719 from=59 to=264 evalue=1.6e-28 interpro_id=IPR012816 interpro_description=Conserved hypothetical protein CHP02464)
YbiA-like (db=superfamily db_id=SSF143990 from=41 to=266 evalue=1.6e-28)
ACD3_14_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

9558..9713
DNA (156bp) protein (52aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
transmembrane_regions 20..39 Tax=ACD3
ACD3_14_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

9717..10643
DNA (927bp) protein (309aa)
hypothetical protein
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=145 to=304 evalue=1.2e-41)
no description (db=Gene3D db_id=G3DSA:3.10.180.30 from=8 to=139 evalue=5.2e-37)
3-dmu-9_3-mt (db=HMMPfam db_id=PF06983 from=145 to=265 evalue=2.0e-35)
ACD3_14_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

10741..11328
DNA (588bp) protein (196aa)
10741..11328 + (rbs_motif=TTAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
ACD3_14_13
unknown

Not on your lists

comp(11325..12224)
DNA (900bp) protein (300aa)
hypothetical protein
KWG repeat domain protein n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185CB74 (db=UNIREF evalue=2.0e-16 bit_score=90.5 identity=43.41 coverage=42.3333333333333)
seg (db=Seg db_id=seg from=93 to=106)
KWG repeat domain protein n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185CB74 Tax=ACD3
ACD3_14_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(12296..12613)
DNA (318bp) protein (106aa)
hypothetical protein
Barstar-related (db=superfamily db_id=SSF52038 from=5 to=93 evalue=8.3e-18)
Barstar (db=HMMPfam db_id=PF01337 from=9 to=90 evalue=5.3e-17 interpro_id=IPR000468 interpro_description=Barstar (barnase inhibitor))
no description (db=Gene3D db_id=G3DSA:3.30.370.10 from=5 to=93 evalue=6.7e-09)
ACD3_14_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(12600..13706)
DNA (1107bp) protein (369aa)
group 1 glycosyl transferase
seg (db=Seg db_id=seg from=131 to=143)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=4 to=366 evalue=4.5e-33)
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=4 to=366 evalue=4.5e-33)
ACD3_14_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(13827..15779)
DNA (1953bp) protein (651aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
Membrane protease FtsH catalytic subunit n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MM09_CRYCD (db=UNIREF evalue=2.0e-126 bit_score=457.0 identity=53.98 coverage=70.6605222734255)
seg (db=Seg db_id=seg from=386 to=399)
ACD3_14_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(15897..16916)
DNA (1020bp) protein (340aa)
hypothetical protein (db=KEGG evalue=2.0e-18 bit_score=97.1 identity=27.05 coverage=77.3529411764706)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=26)
ACD3_14_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

17000..17734
DNA (735bp) protein (245aa)
seg (db=Seg db_id=seg from=41 to=51)
seg (db=Seg db_id=seg from=68 to=95)
seg (db=Seg db_id=seg from=104 to=114)
seg 41..51 Tax=ACD3
ACD3_14_19
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(17782..18894)
DNA (1113bp) protein (371aa)
dnaJ; molecular chaperone DnaJ
seg (db=Seg db_id=seg from=207 to=218)
seg (db=Seg db_id=seg from=68 to=107)
DNAJ_1 (db=PatternScan db_id=PS00636 from=46 to=65 evalue=0.0 interpro_id=IPR018253 interpro_description=Heat shock protein DnaJ, conserved site GO=Molecular Function: heat shock protein binding (GO:0031072))
ACD3_14_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(19059..20021)
DNA (963bp) protein (321aa)
19059..20021 - (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
ACD3_14_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

20340..20885
DNA (546bp) protein (182aa)
ribosomal RNA adenine methylase transferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=174 evalue=2.4e-17)
RrnaAD (db=HMMPfam db_id=PF00398 from=15 to=128 evalue=2.2e-05 interpro_id=IPR001737 interpro_description=Ribosomal RNA adenine methylase transferase GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
hypothetical protein alias=ACD3_C00014G00021,ACD3_372.27626.77G0021,ACD3_372.27626.77_21 id=49755 tax=ACD3 species=Clostridium beijerinckii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
ACD3_14_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

21048..21764
DNA (717bp) protein (239aa)
21048..21764 + (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
hypothetical protein
ACD3_14_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(21774..23468)
DNA (1695bp) protein (565aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=526 to=548)
seg (db=Seg db_id=seg from=395 to=406)
seg (db=Seg db_id=seg from=88 to=97)
seg 88..97 Tax=ACD3
ACD3_14_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(23510..26080)
DNA (2571bp) protein (857aa)
seg (db=Seg db_id=seg from=782 to=799)
transmembrane_regions (db=TMHMM db_id=tmhmm from=765 to=787)
transmembrane_regions (db=TMHMM db_id=tmhmm from=723 to=745)
transmembrane_regions (db=TMHMM db_id=tmhmm from=686 to=703)
ACD3_14_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(26599..27690)
DNA (1092bp) protein (364aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
seg (db=Seg db_id=seg from=196 to=212)
seg (db=Seg db_id=seg from=155 to=165)
Displaying 25 items

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