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ACD3_22

Alias: ACD3_333.36044.68

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_22_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(3..71)
DNA (69bp) protein (23aa)
seg (db=Seg db_id=seg from=8 to=16)
seg 8..16 Tax=ACD3
ACD3_22_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(111..1784)
DNA (1674bp) protein (558aa)
seg (db=Seg db_id=seg from=46 to=58)
seg (db=Seg db_id=seg from=121 to=127)
seg (db=Seg db_id=seg from=155 to=166)
seg (db=Seg db_id=seg from=24 to=45)
ACD3_22_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(1886..2191)
DNA (306bp) protein (102aa)
seg (db=Seg db_id=seg from=67 to=78)
seg (db=Seg db_id=seg from=4 to=17)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=18 evalue=6.0)
seg 4..17 Tax=ACD3
ACD3_22_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

2312..4567
DNA (2256bp) protein (752aa)
DNA topoisomerase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K217_DESAC (db=UNIREF evalue=2.0e-149 bit_score=533.0 identity=41.74 coverage=94.4148936170213)
DNA topoisomerase I
DNA topoisomerase I
seg (db=Seg db_id=seg from=58 to=72)
ACD3_22_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

4583..4777
DNA (195bp) protein (65aa)
4583..4777 + (rbs_motif=TTAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
ACD3_22_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

4789..5868
DNA (1080bp) protein (360aa)
DNA protecting protein DprA
DNA_processg_A (db=HMMPfam db_id=PF02481 from=69 to=275 evalue=2.1e-53 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=77 to=282 evalue=4.3e-20)
transcriptional regulator, MarR family; K04096 DNA processing protein alias=ACD3_C00022G00006,ACD3_333.36044.68G0006,ACD3_333.36044.68_6 id=49971 tax=ACD3 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
ACD3_22_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

5844..6311
DNA (468bp) protein (156aa)
Nudix (db=superfamily db_id=SSF55811 from=9 to=154 evalue=1.4e-15 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=29 to=155 evalue=2.2e-08 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=27 to=139 evalue=1.1e-05 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
MUTT/NUDIX HYDROLASE (db=HMMPanther db_id=PTHR22769 from=29 to=138 evalue=0.00017)
ACD3_22_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

6316..7377
DNA (1062bp) protein (354aa)
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR21015 from=1 to=306 evalue=5.8e-51)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=2 to=309 evalue=8.8e-41)
no description (db=Gene3D db_id=G3DSA:3.40.50.2000 from=2 to=192 evalue=2.5e-26)
ACD3_22_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

7397..7585
DNA (189bp) protein (63aa)
7397..7585 + (rbs_motif=TAA rbs_spacer=4bp)
hypothetical protein Tax=ACD3
ACD3_22_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(7623..9596)
DNA (1974bp) protein (658aa)
ankyrin 2,3/unc44 (db=KEGG evalue=3.0e-07 bit_score=60.8 identity=25.56 coverage=31.1550151975684)
seg (db=Seg db_id=seg from=75 to=91)
seg (db=Seg db_id=seg from=140 to=149)
seg (db=Seg db_id=seg from=649 to=656)
ACD3_22_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

10073..10441
DNA (369bp) protein (123aa)
single stranded DNA-binding protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=4 to=114 evalue=5.0e-31 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=106 evalue=5.1e-30 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=4 to=116 evalue=3.2e-27 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD3_22_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

10647..11390
DNA (744bp) protein (248aa)
NUDIX hydrolase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9M8_MAGSM (db=UNIREF evalue=2.0e-08 bit_score=62.8 identity=23.62 coverage=75.4032258064516)
NUDIX hydrolase (db=KEGG evalue=2.0e-08 bit_score=62.8 identity=23.62 coverage=75.4032258064516)
Nudix (db=superfamily db_id=SSF55811 from=50 to=227 evalue=1.6e-07 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=62 to=222 evalue=1.0e-05 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD3_22_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

11433..13205
DNA (1773bp) protein (591aa)
seg (db=Seg db_id=seg from=465 to=483)
seg (db=Seg db_id=seg from=508 to=521)
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=153)
seg 465..483 Tax=ACD3
ACD3_22_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

13240..18081
DNA (4842bp) protein (1614aa)
signal transduction protein (db=KEGG evalue=7.0e-09 bit_score=67.8 identity=23.46 coverage=14.4361833952912)
seg (db=Seg db_id=seg from=1138 to=1150)
seg (db=Seg db_id=seg from=973 to=990)
seg (db=Seg db_id=seg from=848 to=869)
ACD3_22_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18439..21348)
DNA (2910bp) protein (970aa)
beta-lactamase-like:RNA-metabolising metallo-beta-lactamase; K07576 metallo-beta-lactamase family protein (db=KEGG evalue=6.0e-28 bit_score=130.0 identity=23.36 coverage=49.6907216494845)
seg (db=Seg db_id=seg from=606 to=623)
coiled-coil (db=Coil db_id=coil from=162 to=190 evalue=NA)
seg (db=Seg db_id=seg from=927 to=940)
ACD3_22_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(21470..24928)
DNA (3459bp) protein (1153aa)
ATP-dependent helicase HrpA
seg (db=Seg db_id=seg from=989 to=1000)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=71 to=391 evalue=5.2e-30)
ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR18934 from=24 to=518 evalue=1.0e-25)
ACD3_22_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(25062..26096)
DNA (1035bp) protein (345aa)
coiled-coil (db=Coil db_id=coil from=272 to=293 evalue=NA)
seg (db=Seg db_id=seg from=15 to=23)
seg (db=Seg db_id=seg from=166 to=193)
seg (db=Seg db_id=seg from=324 to=336)
ACD3_22_18
unknown

Not on your lists

26719..27102
DNA (384bp) protein (128aa)
Translation initiation factor IF-3, chloroplastic n=1 Tax=Galdieria sulphuraria RepID=IF3C_GALSU (db=UNIREF evalue=3.0e-14 bit_score=80.5 identity=36.22 coverage=98.4375)
translation initiation factor IF-3 (db=KEGG evalue=1.0e-12 bit_score=75.1 identity=30.71 coverage=98.4375)
Translation initiation factor IF3, C-terminal domain (db=superfamily db_id=SSF55200 from=42 to=127 evalue=2.5e-15 interpro_id=IPR019815 interpro_description=Translation initiation factor 3, C-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=1 to=127 evalue=7.0e-14 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD3_22_19

Not on your lists


27132..27329
DNA (198bp) protein (66aa)
RIBOSOMAL_L35 (db=PatternScan db_id=PS00936 from=4 to=30 evalue=0.0 interpro_id=IPR018265 interpro_description=Ribosomal protein L35, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L35p-like (db=superfamily db_id=SSF143034 from=1 to=64 evalue=2.8e-15)
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=58 evalue=1.1e-11 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=1 to=63 evalue=3.5e-11 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_22_20
ACD3, Gracilibacteria, Bacteria

Not on your lists


27389..27733
DNA (345bp) protein (115aa)
50S ribosomal protein L20
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=2 to=109 evalue=6.0e-36 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=9.5e-36 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L20 (db=HMMPanther db_id=PTHR10986 from=1 to=114 evalue=3.5e-29 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD3_22_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(27817..28071)
DNA (255bp) protein (85aa)
coiled-coil (db=Coil db_id=coil from=44 to=85 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=44)
coiled-coil 44..85 Tax=ACD3
ACD3_22_22
unknown

Not on your lists

comp(28323..29390)
DNA (1068bp) protein (356aa)
ribosomal RNA large subunit methyltransferase N
Ribosomal RNA large subunit methyltransferase N n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB37_9FIRM (db=UNIREF evalue=2.0e-64 bit_score=249.0 identity=41.21 coverage=91.0112359550562)
Predicted radical SAM enzyme, Cfr type (db=HMMPIR db_id=PIRSF006004 from=3 to=353 evalue=1.1e-97 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
TIGR00048: radical SAM enzyme, Cfr family (db=HMMTigr db_id=TIGR00048 from=1 to=352 evalue=8.7e-77 interpro_id=IPR004383 interpro_description=Ribosomal RNA large subunit methyltransferase RlmN; GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
ACD3_22_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(29491..29628)
DNA (138bp) protein (46aa)
29491..29628 - (rbs_motif=TTA rbs_spacer=14bp)
hypothetical protein Tax=ACD3
ACD3_22_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(29588..30331)
DNA (744bp) protein (248aa)
seg (db=Seg db_id=seg from=120 to=133)
seg 120..133 Tax=ACD3
ACD3_22_25

Not on your lists

comp(30340..31911)
DNA (1572bp) protein (524aa)
Lipoprotein protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5M9_9RHIZ (db=UNIREF evalue=9.0e-14 bit_score=82.4 identity=37.86 coverage=17.9389312977099)
peptidase M23 (db=KEGG evalue=2.0e-12 bit_score=78.2 identity=31.37 coverage=26.1450381679389)
seg (db=Seg db_id=seg from=8 to=22)
seg (db=Seg db_id=seg from=319 to=342)
ACD3_22_26
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(32106..33836)
DNA (1731bp) protein (577aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=553 to=570)
transmembrane_regions 5..24 Tax=ACD3
ACD3_22_27
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(33945..35021)
DNA (1077bp) protein (359aa)
recF protein
RECF_2 (db=PatternScan db_id=PS00618 from=309 to=327 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=348 evalue=9.2e-26)
recf: DNA replication and repair protein Rec (db=HMMTigr db_id=TIGR00611 from=1 to=353 evalue=1.1e-14 interpro_id=IPR001238 interpro_description=DNA-binding, RecF GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD3_22_28
unknown

Not on your lists

comp(35021..35317)
DNA (297bp) protein (99aa)
Glutamyl-tRNA(Gln) amidotransferase subunit C n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WCR5_FUSMR (db=UNIREF evalue=1.0e-09 bit_score=65.5 identity=43.37 coverage=80.8080808080808)
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=2 to=96 evalue=5.9e-15)
Glu-tRNAGln (db=HMMPfam db_id=PF02686 from=19 to=84 evalue=8.1e-11 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=3 to=98 evalue=1.6e-10 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
ACD3_22_29
ACD3, Gracilibacteria, Bacteria

Not on your lists

35362..35721
DNA (360bp) protein (120aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=97 to=116)
transmembrane_regions 34..53 Tax=ACD3
ACD3_22_30
ACD3, Gracilibacteria, Bacteria

Not on your lists

35736..36107
DNA (372bp) protein (124aa)
seg (db=Seg db_id=seg from=4 to=14)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=17 evalue=6.0)
seg 4..14 Tax=ACD3
Displaying 30 items

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