Alias: ACD3_6.32582.71
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD3_28_1
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(115..594)
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smpB; SsrA-binding protein
seg (db=Seg db_id=seg from=133 to=144)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=13 to=156 evalue=9.5e-38 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=6 to=138 evalue=1.3e-34 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
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ACD3_28_2
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(595..1035)
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||
ACD3_28_3
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(1025..1957)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Kazal-type serine protease inhibitors (db=superfamily db_id=SSF100895 from=34 to=84 evalue=4.8e-10)
Kazal_1 (db=HMMPfam db_id=PF00050 from=44 to=69 evalue=2.3e-06 interpro_id=IPR002350 interpro_description=Proteinase inhibitor I1, Kazal)
no description (db=Gene3D db_id=G3DSA:3.30.60.30 from=42 to=87 evalue=3.8e-05)
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ACD3_28_4
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(2061..2327)
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seg (db=Seg db_id=seg from=57 to=69)
seg 57..69 Tax=ACD3
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ACD3_28_5
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(2340..4142)
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alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMR5_9SPIO (db=UNIREF evalue=6.0e-149 bit_score=531.0 identity=49.09 coverage=98.6688851913478)
seg (db=Seg db_id=seg from=248 to=265)
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ACD3_28_6
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(4372..6597)
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seg (db=Seg db_id=seg from=251 to=263)
seg 251..263 Tax=ACD3
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ACD3_28_7
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(6644..7129)
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hypothetical protein
seg (db=Seg db_id=seg from=140 to=151)
RuvC (db=HMMPfam db_id=PF02075 from=4 to=149 evalue=1.5e-36 interpro_id=IPR002176 interpro_description=Crossover junction endodeoxyribonuclease RuvC GO=Molecular Function: endodeoxyribonuclease activity (GO:0004520), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=2 to=161 evalue=8.1e-33)
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ACD3_28_8
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
7180..7326
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7180..7326 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
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ACD3_28_9
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(7323..7838)
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LigT-like (db=superfamily db_id=SSF55144 from=1 to=133 evalue=1.1e-06 interpro_id=IPR009097 interpro_description=RNA ligase/cyclic nucleotide phosphodiesterase GO=Molecular Function: catalytic activity (GO:0003824), Cellular Component: intracellular (GO:0005622), Biological Process: RNA metabolic process (GO:0016070))
LigT-like 1..133 Tax=ACD3
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ACD3_28_10
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(7893..8678)
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7893..8678 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
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ACD3_28_11
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(8699..9202)
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peptide deformylase (EC:3.5.1.88)
Pep_deformylase (db=HMMPfam db_id=PF01327 from=10 to=159 evalue=1.1e-35 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=155 evalue=3.4e-33 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
POLYPEPTIDE DEFORMYLASE (db=HMMPanther db_id=PTHR10458 from=7 to=159 evalue=2.2e-31 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
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ACD3_28_12
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
9284..10591
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UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase
seg (db=Seg db_id=seg from=39 to=51)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=41 to=428 evalue=1.4e-97)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=41 to=428 evalue=1.4e-97)
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ACD3_28_13
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(10637..10954)
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10637..10954 - (rbs_motif=TTAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
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ACD3_28_14
unknown
|
Not on your lists |
11304..11615
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50S ribosomal protein L21 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3E9_9BACT (db=UNIREF evalue=5.0e-14 bit_score=80.1 identity=36.27 coverage=97.1153846153846)
50S ribosomal protein L21
Ribosomal_L21p (db=HMMPfam db_id=PF00829 from=1 to=97 evalue=4.7e-25 interpro_id=IPR001787 interpro_description=Ribosomal protein L21 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L21p-like (db=superfamily db_id=SSF141091 from=1 to=102 evalue=5.4e-24)
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ACD3_28_15
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
11686..12780
|
putative CHAP domain containing protein
seg (db=Seg db_id=seg from=21 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
seg (db=Seg db_id=seg from=211 to=244)
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ACD3_28_16
unknown
|
Not on your lists |
12880..14364
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membrane protein
hypothetical protein cdiviTM7_00321 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25AF (db=UNIREF evalue=2.0e-40 bit_score=171.0 identity=28.16 coverage=80.6060606060606)
seg (db=Seg db_id=seg from=413 to=427)
seg (db=Seg db_id=seg from=60 to=69)
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ACD3_28_17
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
14375..15628
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions 17..39 Tax=ACD3
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ACD3_28_18
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(15662..17017)
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RNA methylase, NOL1/NOP2/sun family n=1 Tax=Pantoea sp. At-9b RepID=C8Q710_9ENTR (db=UNIREF evalue=3.0e-43 bit_score=180.0 identity=34.81 coverage=64.8230088495575)
yebU; RNA methyltransferase RsmF
NOL1_NOP2_SUN (db=PatternScan db_id=PS01153 from=184 to=195 evalue=0.0 interpro_id=IPR018314 interpro_description=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: methyltransferase activity (GO:0008168))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=18 to=291 evalue=6.1e-45)
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ACD3_28_19
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
17088..18059
|
hypothetical protein
seg (db=Seg db_id=seg from=262 to=278)
seg (db=Seg db_id=seg from=104 to=115)
transmembrane_regions (db=TMHMM db_id=tmhmm from=285 to=302)
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ACD3_28_20
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
comp(18110..18697)
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18110..18697 - (rbs_motif=TTAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
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ACD3_28_21
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
18741..19361
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rrmJ; ribosomal RNA large subunit methyltransferase RrmJ (EC:2.1.1.-)
23S ribosomal RNA methyltransferase (db=HMMPIR db_id=PIRSF005461 from=5 to=206 evalue=2.0e-50 interpro_id=IPR016448 interpro_description=23S ribosomal RNA methyltransferase GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
RIBOSOMAL RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10920 from=15 to=201 evalue=7.8e-49 interpro_id=IPR015507 interpro_description=Ribosomal RNA methyltransferase J GO=Molecular Function: methyltransferase activity (GO:0008168), Biological Process: rRNA methylation (GO:0031167))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=25 to=206 evalue=1.5e-41)
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ACD3_28_22
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
19377..20453
|
metallophosphoesterase
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=118)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
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ACD3_28_23
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
20691..21851
|
20691..21851 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
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ACD3_28_24
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
21868..22548
|
coiled-coil (db=Coil db_id=coil from=156 to=177 evalue=NA)
coiled-coil 156..177 Tax=ACD3
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ACD3_28_25
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
22551..22685
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22551..22685 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
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ACD3_28_26
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
22733..23389
|
seg (db=Seg db_id=seg from=88 to=99)
seg 88..99 Tax=ACD3
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ACD3_28_27
ACD3, Gracilibacteria, Bacteria
|
Not on your lists |
23561..25867
|
seg (db=Seg db_id=seg from=360 to=379)
seg (db=Seg db_id=seg from=259 to=272)
seg (db=Seg db_id=seg from=60 to=81)
coiled-coil (db=Coil db_id=coil from=355 to=380 evalue=NA)
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ACD3_28_28
unknown
|
Not on your lists |
25953..28202
|
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J980_9ARCH (db=UNIREF evalue=8.0e-76 bit_score=289.0 identity=39.44 coverage=55.7333333333333)
seg (db=Seg db_id=seg from=543 to=555)
coiled-coil (db=Coil db_id=coil from=716 to=737 evalue=NA)
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ACD3_28_29
ACD3, Gracilibacteria, Bacteria
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Not on your lists |
28281..29720
|
Divergent AAA domain-containing protein
Divergent AAA domain-containing protein
Predicted transcriptional regulator containing an HTH domain n=8 Tax=Haemophilus influenzae RepID=A5UB39_HAEIE (db=UNIREF evalue=1.0e-116 bit_score=423.0 identity=46.46 coverage=98.5416666666667)
seg (db=Seg db_id=seg from=49 to=61)
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ACD3_28_30
unknown
|
Not on your lists |
30071..31300
|
Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EBS7_9CHLO (db=UNIREF evalue=1.0e-48 bit_score=197.0 identity=34.41 coverage=85.3658536585366)
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20)
seg (db=Seg db_id=seg from=312 to=328)
coiled-coil (db=Coil db_id=coil from=312 to=333 evalue=NA)
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