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ACD3_32

Alias: ACD3_176.27036.63

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_32_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

3..2141
DNA (2139bp) protein (713aa)
ATP-dependent DNA helicase PcrA
ATP-dependent DNA helicase PcrA
ATP-dependent DNA helicase PcrA n=3 Tax=Geobacillus RepID=C5D4J1_GEOSW (db=UNIREF evalue=9.0e-138 bit_score=494.0 identity=40.8 coverage=97.7559607293128)
seg (db=Seg db_id=seg from=314 to=325)
ACD3_32_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2210..2500)
DNA (291bp) protein (97aa)
Excinuclease ABC subunit C domain-containing protein
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=4 to=92 evalue=5.6e-13 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=6 to=75 evalue=1.6e-08 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
endonuclease; K07461 putative endonuclease alias=ACD3_176.27036.63G0002,ACD3_176.27036.63_2,ACD3_C00032G00002 id=50278 tax=ACD3 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_32_3
ACD3, ACD3, ACD3, ACD3, Gracilibacteria, Bacteria

Not on your lists

2899..2997
DNA (99bp) protein (33aa)
2899..2997 + (rbs_motif=TAA rbs_spacer=10bp)
ACD3_32_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

2997..3380
DNA (384bp) protein (128aa)
hypothetical protein, Fic/DOC family
DOC_P1: death-on-curing family protein (db=HMMTigr db_id=TIGR01550 from=3 to=118 evalue=1.0e-09 interpro_id=IPR006440 interpro_description=Death-on-curing protein)
Fic (db=HMMPfam db_id=PF02661 from=4 to=81 evalue=9.6e-08 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing, related)
gb def: Hypothetical protein MA1868 (db=HMMPanther db_id=PTHR13504:SF4 from=63 to=92 evalue=0.001)
ACD3_32_5

Not on your lists

3380..4468
DNA (1089bp) protein (363aa)
Glycosyl transferase
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Vibrio cholerae RC385 RepID=A6Y663_VIBCH (db=UNIREF evalue=2.0e-27 bit_score=126.0 identity=34.48 coverage=59.7796143250689)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
ACD3_32_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

4728..6107
DNA (1380bp) protein (460aa)
ATPase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=245 evalue=3.5e-18)
Arch_ATPase (db=HMMPfam db_id=PF01637 from=3 to=205 evalue=1.2e-17 interpro_id=IPR011579 interpro_description=ATPase domain, prokaryote GO=Molecular Function: ATP binding (GO:0005524))
DUF234 (db=HMMPfam db_id=PF03008 from=320 to=410 evalue=1.2e-14 interpro_id=IPR004256 interpro_description=Protein of unknown function DUF234, DEXX-box ATPase C-terminal)
ACD3_32_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

6133..6951
DNA (819bp) protein (273aa)
family 2 glycosyl transferase
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=257 evalue=2.5e-36)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=2 to=257 evalue=1.1e-33)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR22916 from=9 to=272 evalue=7.0e-15)
ACD3_32_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

6951..8147
DNA (1197bp) protein (399aa)
putative lipopolysaccharide heptosyltransferase III (EC:2.4.1.-); K02849 heptosyltransferase III [EC:2.4.-.-] (db=KEGG evalue=3.0e-17 bit_score=93.2 identity=21.17 coverage=83.9598997493734)
seg (db=Seg db_id=seg from=2 to=17)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=47 to=397 evalue=5.3e-40)
no description (db=Gene3D db_id=G3DSA:3.40.50.2000 from=216 to=396 evalue=5.2e-23)
ACD3_32_9
unknown

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8210..9337
DNA (1128bp) protein (376aa)
glycosyl transferase group 1
Glycosyltransferase WbaZ n=3 Tax=Enterobacteriaceae RepID=Q9X4C6_ECOLX (db=UNIREF evalue=1.0e-12 bit_score=77.8 identity=27.97 coverage=59.0425531914894)
seg (db=Seg db_id=seg from=246 to=268)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=3 to=375 evalue=1.4e-40)
ACD3_32_10
unknown

Not on your lists

9347..10048
DNA (702bp) protein (234aa)
Putative methyltransferase type 12 n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PJV4_9PROT (db=UNIREF evalue=2.0e-08 bit_score=62.8 identity=30.0 coverage=68.3760683760684)
seg (db=Seg db_id=seg from=197 to=213)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=219)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=201 evalue=1.6e-10)
ACD3_32_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

10050..11171
DNA (1122bp) protein (374aa)
group 1 glycosyl transferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=3 to=373 evalue=2.7e-43)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=3 to=373 evalue=2.7e-30)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF41 from=3 to=373 evalue=2.7e-30)
ACD3_32_12
unknown

Not on your lists

comp(11168..12184)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE91_9RHOB (db=UNIREF evalue=3.0e-13 bit_score=79.7 identity=26.94 coverage=60.4719764011799)
glycosyl transferase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=302 to=324)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=5 to=247 evalue=5.0e-24)
ACD3_32_13
unknown

Not on your lists

comp(12174..12752)
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SQR0_9FIRM (db=UNIREF evalue=7.0e-24 bit_score=113.0 identity=39.07 coverage=77.720207253886)
acetyltransferase
Trimeric LpxA-like enzymes (db=superfamily db_id=SSF51161 from=19 to=179 evalue=1.3e-21 interpro_id=IPR011004 interpro_description=Trimeric LpxA-like GO=Molecular Function: transferase activity (GO:0016740))
no description (db=Gene3D db_id=G3DSA:2.160.10.10 from=68 to=180 evalue=7.8e-18)
ACD3_32_14

Not on your lists

comp(12740..13984)
DNA (1245bp) protein (415aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQS5_9FIRM (db=UNIREF evalue=2.0e-32 bit_score=143.0 identity=29.78 coverage=93.7349397590361)
Uncharacterized protein {ECO:0000313|EMBL:EKE28275.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
glycosyltransferase
ACD3_32_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(14002..15129)
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) RepID=A1AXF3_RUTMC (db=UNIREF evalue=1.0e-84 bit_score=316.0 identity=43.8 coverage=99.468085106383)
hypothetical protein
hypothetical protein
Methyltransf_14 (db=HMMPfam db_id=PF08484 from=278 to=368 evalue=3.0e-05 interpro_id=IPR013691 interpro_description=C-methyltransferase)
ACD3_32_16
unknown

Not on your lists

comp(15133..15636)
DNA (504bp) protein (168aa)
Low specificity phosphatase (HAD superfamily)-like n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YTW9_9CHLB (db=UNIREF evalue=1.0e-30 bit_score=135.0 identity=43.24 coverage=86.9047619047619)
Low specificity phosphatase (EC:3.1.3.45)
HAD-like (db=superfamily db_id=SSF56784 from=9 to=155 evalue=1.2e-17)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=6 to=166 evalue=3.9e-15)
ACD3_32_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(15609..17174)
DNA (1566bp) protein (522aa)
nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (EIF-2Bgamma/eIF-2Bepsilon)-like protein
seg (db=Seg db_id=seg from=34 to=45)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=16 to=228 evalue=1.2e-08)
hypothetical protein alias=ACD3_C00032G00017,ACD3_176.27036.63G0017,ACD3_176.27036.63_17 id=50257 tax=ACD3 species=Prochlorococcus marinus genus=Prochlorococcus taxon_order=Prochlorales taxon_class=unknown phylum=Cyanobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_32_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(17192..17893)
DNA (702bp) protein (234aa)
nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (EIF-2Bgamma/eIF-2Bepsilon)-like protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=231 evalue=4.4e-11)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=229 evalue=5.5e-08)
hypothetical protein alias=ACD3_C00032G00018,ACD3_176.27036.63G0018,ACD3_176.27036.63_18 id=50258 tax=ACD3 species=Candidatus Ruthia magnifica genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_32_19
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(17911..18585)
DNA (675bp) protein (225aa)
ribulose-phosphate 3-epimerase
Ribul_P_3_epim (db=HMMPfam db_id=PF00834 from=6 to=202 evalue=1.1e-46 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
RIBULOSE-5-PHOSPHATE-3-EPIMERASE (db=HMMPanther db_id=PTHR11749 from=16 to=224 evalue=2.2e-44 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
Ribulose-phoshate binding barrel (db=superfamily db_id=SSF51366 from=3 to=220 evalue=6.5e-44 interpro_id=IPR011060 interpro_description=Ribulose-phosphate binding barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD3_32_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18610..19164)
DNA (555bp) protein (185aa)
6-phospho 3-hexuloisomerase (EC:5.3.1.27)
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=2 to=184 evalue=1.2e-29)
SIS domain (db=superfamily db_id=SSF53697 from=1 to=184 evalue=6.0e-25)
6-phospho 3-hexuloisomerase (EC:5.3.1.27); K08094 6-phospho-3-hexuloisomerase [EC:5.3.1.27] alias=ACD3_C00032G00020,ACD3_176.27036.63_20,ACD3_176.27036.63G0020 id=50263 tax=ACD3 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
ACD3_32_21
unknown

Not on your lists

comp(19251..20582)
DNA (1332bp) protein (444aa)
membrane protein
Probable polysaccharide biosynthesis protein n=1 Tax=Shewanella benthica KT99 RepID=A9D4K3_9GAMM (db=UNIREF evalue=7.0e-46 bit_score=188.0 identity=31.97 coverage=87.3873873873874)
seg (db=Seg db_id=seg from=433 to=443)
seg (db=Seg db_id=seg from=407 to=416)
ACD3_32_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(20607..21764)
DNA (1158bp) protein (386aa)
gmd; GDP-mannose 4,6-dehydratase
seg (db=Seg db_id=seg from=286 to=304)
gmd: GDP-mannose 4,6-dehydratase (db=HMMTigr db_id=TIGR01472 from=22 to=367 evalue=6.3e-205 interpro_id=IPR006368 interpro_description=GDP-mannose 4,6-dehydratase GO=Cellular Component: intracellular (GO:0005622), Molecular Function: GDP-mannose 4,6-dehydratase activity (GO:0008446), Biological Process: GDP-mannose metabolic process (GO:0019673))
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=26 to=370 evalue=8.5e-155)
ACD3_32_23

Not on your lists

21872..22882
DNA (1011bp) protein (337aa)
hypothetical protein
seg (db=Seg db_id=seg from=299 to=317)
seg (db=Seg db_id=seg from=229 to=238)
hypothetical protein alias=ACD3_C00032G00023,ACD3_176.27036.63G0023,ACD3_176.27036.63_23 id=50253 tax=ACD3 species=Brevibacillus brevis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
ACD3_32_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(22902..23780)
DNA (879bp) protein (293aa)
Lipopolysaccharide 3-alpha-galactosyltransferase (EC:2.4.1.44)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=247 evalue=5.4e-42)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=248 evalue=3.7e-38)
Glyco_transf_8 (db=HMMPfam db_id=PF01501 from=5 to=232 evalue=1.8e-32 interpro_id=IPR002495 interpro_description=Glycosyl transferase, family 8 GO=Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757))
May just be galactosyltransferase or glycosyltransferase Jill Banfield (11/15/12)
ACD3_32_25
unknown

Not on your lists

comp(23805..24740)
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A7UZ53_BACUN (db=UNIREF evalue=4.0e-122 bit_score=441.0 identity=68.06 coverage=98.7179487179487)
NAD-dependent dehydratase
DTDP-GLUCOSE 4-6-DEHYDRATASE (db=HMMPanther db_id=PTHR10366:SF35 from=6 to=309 evalue=3.8e-136)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=6 to=309 evalue=3.8e-136)
rfbE? Jill Banfield (11/15/12)
ACD3_32_26
unknown

Not on your lists

25672..26694
DNA (1023bp) protein (341aa)
Putative uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3D2_9RHOB (db=UNIREF evalue=5.0e-60 bit_score=235.0 identity=36.31 coverage=96.4809384164223)
hypothetical protein
Fic-like (db=superfamily db_id=SSF140931 from=170 to=339 evalue=3.1e-10)
FIDO (db=ProfileScan db_id=PS51459 from=194 to=330 evalue=10.705)
ACD3_32_27
ACD3, ACD3, ACD3, ACD3, Gracilibacteria, Bacteria

Not on your lists

27035..27100
DNA (66bp) protein (22aa)
27035..27100 + (rbs_motif=TAA rbs_spacer=8bp)
Displaying 27 items

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