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ACD3_34

Alias: ACD3_1256.52851.79

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_34_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

87..1481
DNA (1395bp) protein (465aa)
GTP-binding protein engA n=7 Tax=Thermoanaerobacter RepID=ENGA_THEP3 (db=UNIREF evalue=7.0e-85 bit_score=318.0 identity=40.94 coverage=92.4731182795699)
ribosome-associated GTPase EngA
ribosome-associated GTPase EngA
GTP-BINDING PROTEIN ENGA (db=HMMPanther db_id=PTHR11649:SF5 from=1 to=448 evalue=7.7e-133)
ACD3_34_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

1556..2317
DNA (762bp) protein (254aa)
ABC-type transport system involved in multi-copper enzyme maturation, permease component
seg (db=Seg db_id=seg from=145 to=164)
transmembrane_regions (db=TMHMM db_id=tmhmm from=224 to=246)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=171)
ACD3_34_3
unknown

Not on your lists

2307..2969
DNA (663bp) protein (221aa)
HemK family modification methylase
Polypeptide chain release factor methyltransferase n=1 Tax=Listeria grayi DSM 20601 RepID=C2C2X7_LISGR (db=UNIREF evalue=1.0e-11 bit_score=73.6 identity=32.18 coverage=83.2579185520362)
seg (db=Seg db_id=seg from=105 to=118)
seg (db=Seg db_id=seg from=56 to=70)
ACD3_34_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

2971..3252
DNA (282bp) protein (94aa)
2971..3252 + (rbs_motif=TTA rbs_spacer=15bp)
hypothetical protein Tax=ACD3
ACD3_34_5

Not on your lists

3282..4328
DNA (1047bp) protein (349aa)
Hypothetical membrane associated protein n=1 Tax=Edwardsiella tarda ATCC 23685 RepID=D4F854_EDWTA (db=UNIREF evalue=7.0e-23 bit_score=111.0 identity=27.4 coverage=75.9312320916905)
nucleic acid binding ob-fold tRNA/helicase-type (db=KEGG evalue=7.0e-21 bit_score=104.0 identity=25.35 coverage=76.7908309455587)
seg (db=Seg db_id=seg from=4 to=15)
Phospholipase D/nuclease (db=superfamily db_id=SSF56024 from=53 to=197 evalue=9.6e-22)
ACD3_34_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

4391..7123
DNA (2733bp) protein (911aa)
coiled-coil (db=Coil db_id=coil from=561 to=582 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=6 to=12)
seg (db=Seg db_id=seg from=440 to=451)
ACD3_34_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

7163..7300
DNA (138bp) protein (46aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=ACD3
ACD3_34_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

7303..8562
DNA (1260bp) protein (420aa)
seg (db=Seg db_id=seg from=399 to=409)
transmembrane_regions (db=TMHMM db_id=tmhmm from=387 to=409)
transmembrane_regions (db=TMHMM db_id=tmhmm from=350 to=372)
transmembrane_regions (db=TMHMM db_id=tmhmm from=258 to=280)
ACD3_34_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

8576..9700
DNA (1125bp) protein (375aa)
glycosyl transferase group 1 (db=KEGG evalue=2.0e-58 bit_score=229.0 identity=38.32 coverage=94.4)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=374 evalue=7.9e-53)
GLYCOSYL TRANSFERASE (db=HMMPanther db_id=PTHR12526:SF21 from=2 to=374 evalue=7.9e-53)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=374 evalue=6.3e-25)
ACD3_34_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

9702..9878
DNA (177bp) protein (59aa)
9702..9878 + (rbs_motif=TTAA rbs_spacer=5bp)
hypothetical protein Tax=ACD3
ACD3_34_11

Not on your lists

9957..10802
DNA (846bp) protein (282aa)
GTP-binding protein Era
GTP-binding protein era homolog n=1 Tax=Spiroplasma citri RepID=Q14P63_SPICI (db=UNIREF evalue=4.0e-37 bit_score=158.0 identity=39.48 coverage=91.1347517730496)
seg (db=Seg db_id=seg from=228 to=236)
seg (db=Seg db_id=seg from=165 to=178)
ACD3_34_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

10803..11171
DNA (369bp) protein (123aa)
seg (db=Seg db_id=seg from=23 to=34)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=6 to=122 evalue=1.1e-08)
Rrf2 (db=HMMPfam db_id=PF02082 from=3 to=79 evalue=3.8e-08 interpro_id=IPR000944 interpro_description=Transcription regulator Rrf2)
HTH_RRF2_2 (db=ProfileScan db_id=PS51197 from=3 to=122 evalue=15.435 interpro_id=IPR000944 interpro_description=Transcription regulator Rrf2)
ACD3_34_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

11450..11866
DNA (417bp) protein (139aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=128 evalue=1.6e-15)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=1 to=122 evalue=6.0e-06)
S-adenosyl-L-methionine-dependent methyltransferases Tax=ACD3
ACD3_34_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

11913..12947
DNA (1035bp) protein (345aa)
seg (db=Seg db_id=seg from=16 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=306 to=328)
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
coiled-coil (db=Coil db_id=coil from=170 to=198 evalue=NA)
ACD3_34_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

13062..13385
DNA (324bp) protein (108aa)
coiled-coil (db=Coil db_id=coil from=43 to=71 evalue=NA)
seg (db=Seg db_id=seg from=93 to=106)
coiled-coil 43..71 Tax=ACD3
ACD3_34_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

13402..19563
DNA (6162bp) protein (2054aa)
seg (db=Seg db_id=seg from=1909 to=1925)
seg (db=Seg db_id=seg from=1501 to=1515)
seg (db=Seg db_id=seg from=1287 to=1302)
transmembrane_regions (db=TMHMM db_id=tmhmm from=306 to=328)
ACD3_34_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

19579..22746
DNA (3168bp) protein (1056aa)
coiled-coil (db=Coil db_id=coil from=160 to=181 evalue=NA)
coiled-coil (db=Coil db_id=coil from=785 to=809 evalue=NA)
seg (db=Seg db_id=seg from=453 to=464)
coiled-coil 160..181 Tax=ACD3
ACD3_34_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(22792..24114)
DNA (1323bp) protein (441aa)
seg (db=Seg db_id=seg from=43 to=52)
coiled-coil (db=Coil db_id=coil from=27 to=48 evalue=NA)
coiled-coil 27..48 Tax=ACD3
ACD3_34_19
unknown

Not on your lists

24392..26068
DNA (1677bp) protein (559aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Trypanosoma brucei RepID=C9ZNQ8_TRYBG (db=UNIREF evalue=1.0e-30 bit_score=138.0 identity=27.98 coverage=89.6243291592129)
transmembrane_regions (db=TMHMM db_id=tmhmm from=340 to=362)
seg (db=Seg db_id=seg from=42 to=60)
ACD3_34_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(26237..26488)
DNA (252bp) protein (84aa)
26237..26488 - (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD3
ACD3_34_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

26718..28085
DNA (1368bp) protein (456aa)
transposase
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=151 to=284 evalue=3.5e-11 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
rve (db=HMMPfam db_id=PF00665 from=160 to=275 evalue=1.2e-10 interpro_id=IPR001584 interpro_description=Integrase, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA integration (GO:0015074))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=171 to=327 evalue=1.7e-05)
ACD3_34_22
unknown

Not on your lists

comp(28153..29430)
DNA (1278bp) protein (426aa)
hypothetical protein CATMIT_00924 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B01C (db=UNIREF evalue=1.0e-43 bit_score=181.0 identity=30.81 coverage=90.1408450704225)
MiaB family RNA modification protein
RADICAL SAM PROTEINS (db=HMMPanther db_id=PTHR11918 from=123 to=370 evalue=6.5e-43 interpro_id=IPR005839 interpro_description=Methylthiotransferase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: RNA modification (GO:0009451), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=68 to=361 evalue=2.9e-37)
ACD3_34_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

29606..30718
DNA (1113bp) protein (371aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=319 to=340)
TPR-like (db=superfamily db_id=SSF48452 from=12 to=82 evalue=8.2e-06)
transmembrane_regions 319..340 Tax=ACD3
ACD3_34_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

30722..31075
DNA (354bp) protein (118aa)
CoA-binding protein
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=2 to=113 evalue=4.2e-20)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=3 to=113 evalue=2.9e-17 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
CoA_binding (db=HMMPfam db_id=PF02629 from=2 to=85 evalue=3.9e-05 interpro_id=IPR003781 interpro_description=CoA-binding)
ACD3_34_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(31087..32808)
DNA (1722bp) protein (574aa)
metal dependent phosphohydrolase (db=KEGG evalue=8.0e-12 bit_score=75.9 identity=28.31 coverage=24.390243902439)
coiled-coil (db=Coil db_id=coil from=497 to=525 evalue=NA)
coiled-coil (db=Coil db_id=coil from=546 to=567 evalue=NA)
seg (db=Seg db_id=seg from=494 to=511)
ACD3_34_26
ACD3, Gracilibacteria, Bacteria

Not on your lists

33393..33833
DNA (441bp) protein (147aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=88)
SNARE_assoc (db=HMMPfam db_id=PF09335 from=9 to=84 evalue=2.1e-08 interpro_id=IPR015414 interpro_description=SNARE associated Golgi protein)
transmembrane_regions 66..88 Tax=ACD3
ACD3_34_27
ACD3, Gracilibacteria, Bacteria

Not on your lists

33844..34944
DNA (1101bp) protein (367aa)
glycosyl transferase family 4 (db=KEGG evalue=8.0e-14 bit_score=81.6 identity=32.02 coverage=45.7765667574932)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=267)
transmembrane_regions (db=TMHMM db_id=tmhmm from=274 to=293)
transmembrane_regions (db=TMHMM db_id=tmhmm from=345 to=364)
PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE Jill Banfield (11/15/12)
ACD3_34_28
ACD3, Gracilibacteria, Bacteria

Not on your lists

34947..35663
DNA (717bp) protein (239aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=4 to=27 evalue=0.034 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions 12..34 Tax=ACD3
ACD3_34_29
unknown

Not on your lists

35664..36614
DNA (951bp) protein (317aa)
Methionyl-tRNA formyltransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEK6_9FIRM (db=UNIREF evalue=3.0e-52 bit_score=209.0 identity=39.14 coverage=94.3217665615142)
methionyl-tRNA formyltransferase
seg (db=Seg db_id=seg from=149 to=162)
fmt: methionyl-tRNA formyltransferase (db=HMMTigr db_id=TIGR00460 from=2 to=314 evalue=2.5e-52 interpro_id=IPR005794 interpro_description=Methionyl-tRNA formyltransferase GO=Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479), Biological Process: translation (GO:0006412))
ACD3_34_30

Not on your lists

36622..37101
DNA (480bp) protein (160aa)
N-acetyltransferase n=1 Tax=Methanosarcina acetivorans RepID=Q8TJV3_METAC (db=UNIREF evalue=2.0e-15 bit_score=84.7 identity=33.56 coverage=90.625)
N-acetyltransferase
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=158 evalue=1.0e-22 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=1 to=158 evalue=7.3e-15 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Displaying items 1-30 of 42 in total

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