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ACD3_35

Alias: ACD3_790.33812.69

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_35_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

3..2120
DNA (2118bp) protein (706aa)
DNA ligase D n=1 Tax=Geobacter sp. FRC-32 RepID=B9LYX5_GEOSF (db=UNIREF evalue=1.0e-163 bit_score=580.0 identity=40.25 coverage=99.0084985835694)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=381 to=392)
ACD3_35_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2124..2885)
DNA (762bp) protein (254aa)
hypothetical protein
TM1631-like (db=superfamily db_id=SSF117396 from=2 to=251 evalue=9.8e-62)
no description (db=Gene3D db_id=G3DSA:3.20.20.410 from=4 to=253 evalue=1.0e-56 interpro_id=IPR002763 interpro_description=Protein of unknown function DUF72)
DUF72 (db=HMMPfam db_id=PF01904 from=20 to=245 evalue=1.2e-55 interpro_id=IPR002763 interpro_description=Protein of unknown function DUF72)
ACD3_35_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

3036..3446
DNA (411bp) protein (137aa)
hypothetical protein (db=KEGG evalue=7.0e-11 bit_score=69.3 identity=31.75 coverage=84.6715328467153)
MTH1598-like (db=superfamily db_id=SSF69819 from=1 to=136 evalue=1.2e-16 interpro_id=IPR002804 interpro_description=Archease, tRNA m5C methyltransferase chaperone)
Archease (db=HMMPfam db_id=PF01951 from=4 to=136 evalue=3.9e-16 interpro_id=IPR002804 interpro_description=Archease, tRNA m5C methyltransferase chaperone)
no description (db=Gene3D db_id=G3DSA:3.55.10.10 from=1 to=136 evalue=1.1e-12 interpro_id=IPR002804 interpro_description=Archease, tRNA m5C methyltransferase chaperone)
ACD3_35_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

3458..4897
DNA (1440bp) protein (480aa)
Putative uncharacterized protein n=1 Tax=Chlorobaculum parvum NCIB 8327 RepID=B3QM85_CHLP8 (db=UNIREF evalue=2.0e-126 bit_score=456.0 identity=46.35 coverage=96.6666666666667)
hypothetical protein
hypothetical protein
Hypothetical protein PH1602 (db=superfamily db_id=SSF103365 from=3 to=478 evalue=1.2e-125 interpro_id=IPR001233 interpro_description=Uncharacterised protein family UPF0027)
ACD3_35_5

Not on your lists

comp(5025..5360)
DNA (336bp) protein (112aa)
membrane protein
Putative uncharacterized protein n=1 Tax=Geobacter sp. M18 RepID=C6MV15_9DELT (db=UNIREF evalue=7.0e-13 bit_score=76.3 identity=66.67 coverage=76.7857142857143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
ACD3_35_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

5584..5793
DNA (210bp) protein (70aa)
hypothetical protein
seg (db=Seg db_id=seg from=56 to=69)
hypothetical protein alias=ACD3_C00035G00006,ACD3_790.33812.69G0006,ACD3_790.33812.69_6 id=50373 tax=ACD3 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein Tax=ACD3
ACD3_35_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

5884..6138
DNA (255bp) protein (85aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=11 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=70)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=15 evalue=7.0)
ACD3_35_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

6149..6682
DNA (534bp) protein (178aa)
hypothetical protein
CYCLOPHILIN (db=HMMPanther db_id=PTHR11071 from=12 to=163 evalue=9.6e-59)
Cyclophilin-like (db=superfamily db_id=SSF50891 from=11 to=163 evalue=9.4e-46 interpro_id=IPR015891 interpro_description=Cyclophilin-like)
no description (db=Gene3D db_id=G3DSA:2.40.100.10 from=12 to=164 evalue=7.9e-40 interpro_id=IPR002130 interpro_description=Peptidyl-prolyl cis-trans isomerase, cyclophilin-type GO=Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755), Biological Process: protein folding (GO:0006457))
ACD3_35_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(6747..8741)
DNA (1995bp) protein (665aa)
adenylate/guanylate cyclase with chase sensor
transmembrane_regions (db=TMHMM db_id=tmhmm from=324 to=343)
transmembrane_regions (db=TMHMM db_id=tmhmm from=348 to=370)
transmembrane_regions (db=TMHMM db_id=tmhmm from=303 to=322)
ACD3_35_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(8833..9567)
DNA (735bp) protein (245aa)
seg (db=Seg db_id=seg from=136 to=150)
seg (db=Seg db_id=seg from=230 to=242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg 136..150 Tax=ACD3
ACD3_35_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(10248..11486)
DNA (1239bp) protein (413aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=219 to=241)
transmembrane_regions (db=TMHMM db_id=tmhmm from=256 to=275)
transmembrane_regions (db=TMHMM db_id=tmhmm from=288 to=310)
transmembrane_regions (db=TMHMM db_id=tmhmm from=347 to=369)
ACD3_35_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

11613..13649
DNA (2037bp) protein (679aa)
HpFtsH; K03798 cell division protease FtsH [EC:3.4.24.-] (db=KEGG evalue=2.0e-22 bit_score=111.0 identity=31.74 coverage=32.6951399116348)
seg (db=Seg db_id=seg from=545 to=557)
seg (db=Seg db_id=seg from=366 to=379)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=328 to=602 evalue=2.2e-35)
ACD3_35_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

13913..14335
DNA (423bp) protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=138)
transmembrane_regions 116..138 Tax=ACD3
ACD3_35_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(15616..17496)
DNA (1881bp) protein (627aa)
GTP-binding protein lepA n=2 Tax=Bacillales RepID=D3E4Y9_GEOS4 (db=UNIREF evalue=7.0e-172 bit_score=607.0 identity=46.58 coverage=94.4178628389155)
lepA; LepA protein
lepA; LepA protein
lepA: GTP-binding protein LepA (db=HMMTigr db_id=TIGR01393 from=1 to=626 evalue=1.4e-266 interpro_id=IPR006297 interpro_description=GTP-binding protein LepA GO=Molecular Function: GTP binding (GO:0005525))
ACD3_35_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

17534..18094
DNA (561bp) protein (187aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=59)
seg (db=Seg db_id=seg from=176 to=186)
seg (db=Seg db_id=seg from=40 to=58)
ACD3_35_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18091..18798)
DNA (708bp) protein (236aa)
heat-inducible transcription repressor HrcA; K03705 heat-inducible transcriptional repressor (db=KEGG evalue=1.0e-19 bit_score=99.8 identity=34.62 coverage=58.8983050847458)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=88 evalue=2.4e-18 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=4 to=90 evalue=2.8e-18)
HrcA (db=HMMPfam db_id=PF01628 from=142 to=223 evalue=0.00016 interpro_id=IPR021153 interpro_description=Winged helix-turn-helix transcription repressor, HrcA, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD3_35_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(19015..20181)
DNA (1167bp) protein (389aa)
hypothetical protein
alr: alanine racemase (db=HMMTigr db_id=TIGR00492 from=25 to=388 evalue=3.2e-39 interpro_id=IPR000821 interpro_description=Alanine racemase GO=Biological Process: alanine metabolic process (GO:0006522), Molecular Function: alanine racemase activity (GO:0008784))
PLP-binding barrel (db=superfamily db_id=SSF51419 from=29 to=262 evalue=1.2e-35)
no description (db=Gene3D db_id=G3DSA:3.20.20.10 from=27 to=239 evalue=6.2e-31)
L- to D-alanine (one step before path to peptidogylcan) Jill Banfield (11/15/12)
ACD3_35_18

Not on your lists

comp(20269..21018)
DNA (750bp) protein (250aa)
20269..21018 - (rbs_motif=TTA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE27388.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_35_19

Not on your lists

21203..22504
DNA (1302bp) protein (434aa)
trigger factor
seg (db=Seg db_id=seg from=25 to=35)
seg (db=Seg db_id=seg from=141 to=155)
seg (db=Seg db_id=seg from=361 to=390)
ACD3_35_20
unknown

Not on your lists

23554..25605
DNA (2052bp) protein (684aa)
two-component response regulator
Sensor protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BJ30_9PROT (db=UNIREF evalue=2.0e-44 bit_score=184.0 identity=29.43 coverage=70.1754385964912)
seg (db=Seg db_id=seg from=257 to=269)
coiled-coil (db=Coil db_id=coil from=296 to=327 evalue=NA)
ACD3_35_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

25630..26100
DNA (471bp) protein (157aa)
winged helix family two component transcriptional regulator
CheY-like (db=superfamily db_id=SSF52172 from=1 to=106 evalue=1.5e-26 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=5 to=106 evalue=1.5e-21)
Response_reg (db=HMMPfam db_id=PF00072 from=6 to=108 evalue=6.8e-19 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD3_35_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

26102..26455
DNA (354bp) protein (118aa)
Anti-sigma factor antagonist SpoIIaa (db=superfamily db_id=SSF52091 from=4 to=115 evalue=9.0e-10 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
no description (db=Gene3D db_id=G3DSA:3.30.750.24 from=2 to=111 evalue=4.3e-05 interpro_id=IPR002645 interpro_description=Sulphate transporter/antisigma-factor antagonist STAS)
Anti-sigma factor antagonist SpoIIaa Tax=ACD3
ACD3_35_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

26463..26852
DNA (390bp) protein (130aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=5 to=23)
seg 5..23 Tax=ACD3
ACD3_35_24
unknown

Not on your lists

comp(26847..28232)
DNA (1386bp) protein (462aa)
hypothetical protein
MiaB-like tRNA modifying enzyme YliG, TIGR01125 n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IKT7_9CHRO (db=UNIREF evalue=6.0e-55 bit_score=218.0 identity=32.63 coverage=85.2813852813853)
seg (db=Seg db_id=seg from=339 to=350)
seg (db=Seg db_id=seg from=270 to=283)
ACD3_35_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(28233..28688)
DNA (456bp) protein (152aa)
seg (db=Seg db_id=seg from=11 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg 11..37 Tax=ACD3
ACD3_35_26

Not on your lists

comp(28727..29602)
DNA (876bp) protein (292aa)
hypothetical protein
seg (db=Seg db_id=seg from=166 to=183)
DUF58 (db=HMMPfam db_id=PF01882 from=39 to=121 evalue=7.6e-13 interpro_id=IPR002881 interpro_description=Protein of unknown function DUF58)
hypothetical protein alias=ACD3_C00035G00026,ACD3_790.33812.69G0026,ACD3_790.33812.69_26 id=50372 tax=ACD3 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi organism_group=BD1-5 organism_desc=BD1-5
ACD3_35_27

Not on your lists

comp(29592..30569)
DNA (978bp) protein (326aa)
ATPase associated with various cellular activities AAA_3 n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QVV6_CHLT3 (db=UNIREF evalue=3.0e-94 bit_score=348.0 identity=52.86 coverage=90.4907975460123)
MoxR-like ATPase
MoxR-like ATPase
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
ACD3_35_28
ACD3, Gracilibacteria, Bacteria

Not on your lists

30725..33040
DNA (2316bp) protein (772aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=5 to=20)
seg (db=Seg db_id=seg from=177 to=189)
seg (db=Seg db_id=seg from=481 to=497)
ACD3_35_29
unknown

Not on your lists

33134..33568
DNA (435bp) protein (145aa)
GCN5-related N-acetyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4L8_9BACT (db=UNIREF evalue=3.0e-14 bit_score=80.5 identity=24.26 coverage=93.1034482758621)
GNAT family acetyltransferase (db=KEGG evalue=9.0e-13 bit_score=75.5 identity=26.98 coverage=86.2068965517241)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=4 to=143 evalue=9.3e-21 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=50 to=140 evalue=8.8e-10 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Displaying 29 items

View Taxonomy