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ACD3_43

Alias: ACD3_1190.31885.63

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_43_1
unknown

Not on your lists

comp(222..2069)
DNA (1848bp) protein (616aa)
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNY3_9FIRM (db=UNIREF evalue=1.0e-12 bit_score=78.6 identity=28.43 coverage=32.1428571428571)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=36)
coiled-coil (db=Coil db_id=coil from=141 to=194 evalue=NA)
ACD3_43_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2130..4379)
DNA (2250bp) protein (750aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=189)
seg (db=Seg db_id=seg from=59 to=87)
seg (db=Seg db_id=seg from=174 to=187)
seg (db=Seg db_id=seg from=409 to=419)
ACD3_43_3

Not on your lists

comp(4444..5007)
DNA (564bp) protein (188aa)
seg (db=Seg db_id=seg from=3 to=18)
seg (db=Seg db_id=seg from=91 to=103)
Uncharacterized protein {ECO:0000313|EMBL:EKE28754.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_43_4

Not on your lists

5073..5834
DNA (762bp) protein (254aa)
map; methionine aminopeptidase (EC:3.4.11.18)
met_pdase_I: methionine aminopeptidase, t (db=HMMTigr db_id=TIGR00500 from=6 to=253 evalue=2.9e-90 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
no description (db=Gene3D db_id=G3DSA:3.90.230.10 from=5 to=251 evalue=1.9e-66 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
Creatinase/aminopeptidase (db=superfamily db_id=SSF55920 from=5 to=251 evalue=3.6e-65 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
ACD3_43_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

5944..6324
DNA (381bp) protein (127aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=54 to=86 evalue=NA)
seg (db=Seg db_id=seg from=61 to=72)
tetratricopeptide TPR_3 alias=ACD3_C00043G00005,ACD3_1190.31885.63G0005,ACD3_1190.31885.63_5 id=50513 tax=ACD3 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi organism_group=BD1-5 organism_desc=BD1-5
ACD3_43_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

6423..8330
DNA (1908bp) protein (636aa)
coiled-coil (db=Coil db_id=coil from=67 to=95 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=252 to=274)
seg (db=Seg db_id=seg from=44 to=62)
coiled-coil 67..95 Tax=ACD3
ACD3_43_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

8330..8911
DNA (582bp) protein (194aa)
8330..8911 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=ACD3
ACD3_43_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

8914..9921
DNA (1008bp) protein (336aa)
peptidase A24A domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=274 to=296)
transmembrane_regions (db=TMHMM db_id=tmhmm from=303 to=325)
seg (db=Seg db_id=seg from=4 to=15)
ACD3_43_9
unknown

Not on your lists


10004..10531
DNA (528bp) protein (176aa)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2 (db=UNIREF evalue=7.0e-19 bit_score=96.3 identity=37.87 coverage=92.0454545454545)
seg (db=Seg db_id=seg from=106 to=117)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2 Tax=ACD3
50S ribosomal protein L7/L12
ACD3_43_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

10689..12959
DNA (2271bp) protein (757aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
GTP pyrophosphokinase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9Z8_CARHZ (db=UNIREF evalue=2.0e-121 bit_score=440.0 identity=39.12 coverage=83.883751651255)
seg (db=Seg db_id=seg from=702 to=712)
ACD3_43_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(12878..13276)
DNA (399bp) protein (133aa)
12878..13276 - (rbs_motif=TTA rbs_spacer=3bp)
hypothetical protein Tax=ACD3
ACD3_43_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

13436..15514
DNA (2079bp) protein (693aa)
1-aminocyclopropane-1-carboxylate deaminase
seg (db=Seg db_id=seg from=14 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=209 to=592 evalue=1.7e-47 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
ACD3_43_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(15597..16205)
DNA (609bp) protein (203aa)
azoR; FMN-dependent NADH-azoreductase (EC:1.7.-.-)
no description (db=Gene3D db_id=G3DSA:3.40.50.360 from=2 to=195 evalue=1.8e-33)
Flavoproteins (db=superfamily db_id=SSF52218 from=1 to=199 evalue=2.8e-30)
Flavodoxin_2 (db=HMMPfam db_id=PF02525 from=1 to=194 evalue=4.1e-25 interpro_id=IPR003680 interpro_description=Flavodoxin-like fold GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: coenzyme binding (GO:0050662))
ACD3_43_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

16294..16596
DNA (303bp) protein (101aa)
putative transcriptional regulator (db=KEGG evalue=6.0e-13 bit_score=76.3 identity=32.63 coverage=93.0693069306931)
HxlR (db=HMMPfam db_id=PF01638 from=13 to=98 evalue=4.1e-17 interpro_id=IPR002577 interpro_description=Helix-turn-helix, HxlR type)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=98 evalue=1.9e-15)
HTH_HXLR (db=ProfileScan db_id=PS51118 from=5 to=100 evalue=21.812 interpro_id=IPR002577 interpro_description=Helix-turn-helix, HxlR type)
ACD3_43_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

16743..18347
DNA (1605bp) protein (535aa)
hypothetical protein
seg (db=Seg db_id=seg from=65 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=496 to=535 evalue=NA)
ACD3_43_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18358..18726)
DNA (369bp) protein (123aa)
18358..18726 - (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
ACD3_43_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

19076..20275
DNA (1200bp) protein (400aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=373 to=394 evalue=NA)
hypothetical protein alias=ACD3_C00043G00017,ACD3_1190.31885.63G0017,ACD3_1190.31885.63_17 id=50505 tax=ACD3 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=BD1-5 organism_desc=BD1-5
hypothetical protein Tax=ACD3
ACD3_43_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

20694..21683
DNA (990bp) protein (330aa)
20694..21683 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
ACD3_43_19
unknown

Not on your lists

21724..23211
DNA (1488bp) protein (496aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XG36_9FLAO (db=UNIREF evalue=6.0e-31 bit_score=139.0 identity=33.61 coverage=68.75)
seg (db=Seg db_id=seg from=477 to=490)
seg (db=Seg db_id=seg from=223 to=234)
ACD3_43_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

23237..25141
DNA (1905bp) protein (635aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
coiled-coil (db=Coil db_id=coil from=607 to=635 evalue=NA)
hypothetical protein alias=ACD3_C00043G00020,ACD3_1190.31885.63G0020,ACD3_1190.31885.63_20 id=50499 tax=ACD3 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=BD1-5 organism_desc=BD1-5
ACD3_43_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

25167..26873
DNA (1707bp) protein (569aa)
putative membrane-anchored cell surface protein
seg (db=Seg db_id=seg from=554 to=568)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=547 to=568 evalue=NA)
ACD3_43_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

26907..27695
DNA (789bp) protein (263aa)
seg (db=Seg db_id=seg from=23 to=52)
seg (db=Seg db_id=seg from=225 to=247)
seg (db=Seg db_id=seg from=184 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
ACD3_43_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(28656..28946)
DNA (291bp) protein (97aa)
putative excinuclease ABC, C subunit, N-terminal
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=2 to=91 evalue=1.4e-15 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=3 to=77 evalue=2.3e-06 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease alias=ACD3_C00043G00023,ACD3_1190.31885.63G0023,ACD3_1190.31885.63_23 id=50508 tax=ACD3 species=Coxiella burnetii genus=Coxiella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_43_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(29066..29536)
DNA (471bp) protein (157aa)
seg (db=Seg db_id=seg from=73 to=84)
Nudix (db=superfamily db_id=SSF55811 from=1 to=156 evalue=5.1e-13 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=10 to=147 evalue=1.8e-09 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=5 to=156 evalue=5.6e-07 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD3_43_25

Not on your lists

29707..30825
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
seg (db=Seg db_id=seg from=68 to=81)
dnan: DNA polymerase III, beta subunit (db=HMMTigr db_id=TIGR00663 from=1 to=372 evalue=1.4e-61 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
no description (db=HMMSmart db_id=SM00480 from=17 to=368 evalue=1.1e-56 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
ACD3_43_26
ACD3, Gracilibacteria, Bacteria

Not on your lists


30901..31929
DNA (1029bp) protein (343aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha
seg (db=Seg db_id=seg from=4 to=19)
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=8 to=342 evalue=5.1e-92)
tRNA-synt_2d (db=HMMPfam db_id=PF01409 from=93 to=342 evalue=9.6e-72 interpro_id=IPR002319 interpro_description=Phenylalanyl-tRNA synthetase alpha chain GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432))
Displaying 26 items

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