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ACD3_47

Alias: ACD3_1557.26516.61

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_47_1
unknown

Not on your lists

comp(56..844)
DNA (789bp) protein (263aa)
Transcriptional regulator, TrmB n=1 Tax=Burkholderia sp. Ch1-1 RepID=D5NS62_9BURK (db=UNIREF evalue=1.0e-09 bit_score=66.6 identity=25.49 coverage=89.7338403041825)
seg (db=Seg db_id=seg from=175 to=185)
seg (db=Seg db_id=seg from=84 to=96)
TrmB (db=HMMPfam db_id=PF01978 from=12 to=77 evalue=9.0e-11 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
ACD3_47_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(930..2321)
DNA (1392bp) protein (464aa)
coiled-coil (db=Coil db_id=coil from=61 to=82 evalue=NA)
seg (db=Seg db_id=seg from=78 to=92)
coiled-coil 61..82 Tax=ACD3
ACD3_47_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

2952..3371
DNA (420bp) protein (140aa)
Terminase_2 (db=HMMPfam db_id=PF03592 from=8 to=68 evalue=2.5e-11 interpro_id=IPR005335 interpro_description=Terminase small subunit GO=Biological Process: DNA packaging (GO:0006323))
Terminase_2 8..68 Tax=ACD3
ACD3_47_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

4300..14616
DNA (10317bp) protein (3439aa)
RHS repeat-associated core domain-containing protein
seg (db=Seg db_id=seg from=2857 to=2908)
seg (db=Seg db_id=seg from=2808 to=2816)
seg (db=Seg db_id=seg from=1355 to=1368)
ACD3_47_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

14583..15266
DNA (684bp) protein (228aa)
SMI1 / KNR4 family protein
seg (db=Seg db_id=seg from=54 to=63)
SMI1_KNR4 (db=HMMPfam db_id=PF09346 from=53 to=183 evalue=1.7e-10 interpro_id=IPR018958 interpro_description=Cell wall assembly/cell proliferation coordinating protein, KNR4-like)
no description (db=HMMSmart db_id=SM00860 from=53 to=185 evalue=5.5e-05 interpro_id=IPR018958 interpro_description=Cell wall assembly/cell proliferation coordinating protein, KNR4-like)
ACD3_47_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(15695..16285)
DNA (591bp) protein (197aa)
integrase
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=4 to=195 evalue=1.3e-28 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=9 to=192 evalue=1.5e-21 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Phage_integrase (db=HMMPfam db_id=PF00589 from=15 to=181 evalue=7.6e-16 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD3_47_7
unknown

Not on your lists

16548..18278
DNA (1731bp) protein (577aa)
histidine kinase
Possible histidine kinase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FX89_9SPHI (db=UNIREF evalue=2.0e-49 bit_score=201.0 identity=36.07 coverage=53.8994800693241)
seg (db=Seg db_id=seg from=316 to=332)
coiled-coil (db=Coil db_id=coil from=249 to=270 evalue=NA)
ACD3_47_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18275..19165)
DNA (891bp) protein (297aa)
phage integrase family protein
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=110 to=291 evalue=7.5e-38 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=110 to=291 evalue=6.5e-34 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Phage_integrase (db=HMMPfam db_id=PF00589 from=112 to=280 evalue=2.8e-31 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD3_47_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

19197..19427
DNA (231bp) protein (77aa)
19197..19427 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=ACD3
ACD3_47_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

19762..20328
DNA (567bp) protein (189aa)
19762..20328 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
ACD3_47_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

20318..20977
DNA (660bp) protein (220aa)
DUF1814 (db=HMMPfam db_id=PF08843 from=13 to=151 evalue=2.4e-11 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
DUF1814 Tax=ACD3
ACD3_47_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

21016..21519
DNA (504bp) protein (168aa)
histone methylation DOT1 family protein (db=KEGG evalue=2.0e-12 bit_score=74.7 identity=32.84 coverage=73.8095238095238)
seg (db=Seg db_id=seg from=4 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
ACD3_47_13

Not on your lists

comp(21516..22442)
DNA (927bp) protein (309aa)
radical SAM domain-containing protein (db=KEGG evalue=2.0e-09 bit_score=67.0 identity=23.68 coverage=82.5242718446602)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=32 to=257 evalue=8.0e-20)
Radical_SAM (db=HMMPfam db_id=PF04055 from=35 to=195 evalue=1.0e-09 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
radical SAM domain-containing protein alias=ACD3_1557.26516.61G0013,ACD3_1557.26516.61_13,ACD3_C00047G00013 id=50600 tax=ACD3 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
ACD3_47_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(22445..23449)
DNA (1005bp) protein (335aa)
Oxygen-independent coproporphyrinogen III oxidase
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=67 to=333 evalue=7.8e-34)
COPROPORPHYRINIGEN III OXIDASE (db=HMMPanther db_id=PTHR13932 from=62 to=269 evalue=2.0e-27)
putative coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] alias=ACD3_1557.26516.61G0014,ACD3_1557.26516.61_14,ACD3_C00047G00014 id=50606 tax=ACD3 species=Anaerococcus vaginalis genus=Anaerococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
ACD3_47_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(23740..24828)
DNA (1089bp) protein (363aa)
23740..24828 - (rbs_motif=TTAA rbs_spacer=13bp)
hypothetical protein Tax=ACD3
ACD3_47_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(24908..25531)
DNA (624bp) protein (208aa)
adenylate kinase (ATP-AMP transphosphorylase) (EC:2.7.4.3)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=203 evalue=3.6e-30)
NUCLEOTIDE KINASE (db=HMMPanther db_id=PTHR23359 from=1 to=205 evalue=4.4e-22 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=206 evalue=2.4e-19)
ACD3_47_17

Not on your lists

comp(25542..26249)
DNA (708bp) protein (236aa)
seg (db=Seg db_id=seg from=123 to=134)
seg (db=Seg db_id=seg from=6 to=18)
Uncharacterized protein {ECO:0000313|EMBL:EKE28350.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Displaying 17 items

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