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ACD3_48

Alias: ACD3_772.26335.64

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_48_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

55..327
DNA (273bp) protein (91aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=73 to=84)
seg 73..84 Tax=ACD3
ACD3_48_2

Not on your lists

comp(330..821)
DNA (492bp) protein (164aa)
flavodoxin
Flavoproteins (db=superfamily db_id=SSF52218 from=1 to=162 evalue=8.0e-19)
flavodoxin alias=ACD3_C00048G00002,ACD3_772.26335.64G0002,ACD3_772.26335.64_2 id=50615 tax=ACD3 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5
Flavodoxin {ECO:0000313|EMBL:EKE27432.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_48_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(870..1082)
DNA (213bp) protein (71aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=13 to=25)
DUF378 (db=HMMPfam db_id=PF04070 from=5 to=58 evalue=1.2e-10 interpro_id=IPR007211 interpro_description=Protein of unknown function DUF378)
ACD3_48_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(1265..1603)
DNA (339bp) protein (113aa)
seg (db=Seg db_id=seg from=80 to=93)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=99)
seg 80..93 Tax=ACD3
ACD3_48_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(1622..1804)
DNA (183bp) protein (61aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=52)
transmembrane_regions 33..52 Tax=ACD3
ACD3_48_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(1826..2071)
DNA (246bp) protein (82aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions 57..79 Tax=ACD3
ACD3_48_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2082..2396)
DNA (315bp) protein (105aa)
endonuclease
seg (db=Seg db_id=seg from=65 to=76)
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=2 to=90 evalue=2.3e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
endonuclease; K07461 putative endonuclease alias=ACD3_C00048G00007,ACD3_772.26335.64G0007,ACD3_772.26335.64_7 id=50636 tax=ACD3 species=Rickettsia bellii genus=Rickettsia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
ACD3_48_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2416..3003)
DNA (588bp) protein (196aa)
metal dependent phosphohydrolase
HDIG: uncharacterized domain HDIG (db=HMMTigr db_id=TIGR00277 from=20 to=97 evalue=0.003 interpro_id=IPR006675 interpro_description=Uncharacterised protein family HDIG)
metal dependent phosphohydrolase alias=ACD3_C00048G00008,ACD3_772.26335.64_8,ACD3_772.26335.64G0008 id=50627 tax=ACD3 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5
metal dependent phosphohydrolase Tax=ACD3
ACD3_48_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(3506..3973)
DNA (468bp) protein (156aa)
3506..3973 - (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=ACD3
ACD3_48_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(4503..4991)
DNA (489bp) protein (163aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
transmembrane_regions (db=TMHMM db_id=tmhmm from=110 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=38)
ACD3_48_11

Not on your lists


comp(5045..6961)
DNA (1917bp) protein (639aa)
DNA gyrase subunit B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDG8_THET1 (db=UNIREF evalue=0.0 bit_score=735.0 identity=57.98 coverage=98.4350547730829)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
seg (db=Seg db_id=seg from=383 to=394)
ACD3_48_12
unknown

Not on your lists

comp(7468..8184)
DNA (717bp) protein (239aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K5_9CLOT (db=UNIREF evalue=3.0e-45 bit_score=185.0 identity=42.42 coverage=92.8870292887029)
Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6K5_9CLOT Tax=ACD3
ACD3_48_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(8187..8609)
DNA (423bp) protein (141aa)
hypothetical protein (db=KEGG evalue=2.0e-09 bit_score=64.3 identity=31.09 coverage=78.0141843971631)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=11 to=140 evalue=3.5e-12 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
UPF0029 (db=HMMPfam db_id=PF01205 from=28 to=132 evalue=2.0e-11 interpro_id=IPR001498 interpro_description=Uncharacterised protein family UPF0029, Impact, N-terminal)
IMPACT-RELATED (db=HMMPanther db_id=PTHR16301 from=1 to=138 evalue=3.3e-07 interpro_id=IPR001498 interpro_description=Uncharacterised protein family UPF0029, Impact, N-terminal)
ACD3_48_14
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(8613..9179)
DNA (567bp) protein (189aa)
guanylate kinase (EC:2.7.4.8)
GUANYLATE_KINASE_1 (db=PatternScan db_id=PS00856 from=39 to=56 evalue=0.0 interpro_id=IPR020590 interpro_description=Guanylate kinase, conserved site)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=185 evalue=9.1e-40)
Guanylate_kin (db=HMMPfam db_id=PF00625 from=6 to=186 evalue=1.0e-31 interpro_id=IPR008144 interpro_description=Guanylate kinase)
ACD3_48_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

9448..10179
DNA (732bp) protein (244aa)
seg (db=Seg db_id=seg from=207 to=221)
seg (db=Seg db_id=seg from=16 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
SH3_3 (db=HMMPfam db_id=PF08239 from=37 to=87 evalue=4.3e-08 interpro_id=IPR013247 interpro_description=SH3, type 3)
ACD3_48_16
ACD3, Gracilibacteria, Bacteria

Not on your lists

10359..11495
DNA (1137bp) protein (379aa)
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=5 Tax=Clostridium botulinum RepID=A7GA05_CLOBL (db=UNIREF evalue=1.0e-119 bit_score=433.0 identity=56.88 coverage=98.9445910290237)
malic enzyme
malic enzyme
seg (db=Seg db_id=seg from=231 to=240)
ACD3_48_17
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(11599..12777)
DNA (1179bp) protein (393aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=116)
ACD3_48_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(13049..16219)
DNA (3171bp) protein (1057aa)
nolG; nodulation protein NolG
transmembrane_regions (db=TMHMM db_id=tmhmm from=1027 to=1049)
seg (db=Seg db_id=seg from=493 to=508)
seg (db=Seg db_id=seg from=518 to=536)
ACD3_48_19
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(16237..16590)
DNA (354bp) protein (118aa)
seg (db=Seg db_id=seg from=71 to=82)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=97 evalue=1.2e-07 interpro_id=IPR011006 interpro_description=CheY-like)
Response_reg (db=HMMPfam db_id=PF00072 from=4 to=95 evalue=0.00014 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
seg 71..82 Tax=ACD3
ACD3_48_20
unknown

Not on your lists

comp(16626..18575)
DNA (1950bp) protein (650aa)
Hypothetical membrane protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IIP5_CLOBU (db=UNIREF evalue=9.0e-15 bit_score=85.9 identity=27.06 coverage=40.7692307692308)
efflux transporter, RND family, MFP subunit (db=KEGG evalue=1.0e-14 bit_score=85.9 identity=26.84 coverage=50.6153846153846)
seg (db=Seg db_id=seg from=212 to=224)
seg (db=Seg db_id=seg from=27 to=42)
ACD3_48_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18596..18847)
DNA (252bp) protein (84aa)
AbrB/MazE/MraZ-like (db=superfamily db_id=SSF89447 from=17 to=68 evalue=5.6e-06)
lp_hng_hel_AbrB: transcriptional regu (db=HMMTigr db_id=TIGR01439 from=23 to=66 evalue=1.3e-05 interpro_id=IPR006339 interpro_description=Transcription regulator AbrB)
AbrB/MazE/MraZ-like Tax=ACD3
ACD3_48_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(18935..19483)
DNA (549bp) protein (183aa)
coiled-coil (db=Coil db_id=coil from=34 to=55 evalue=NA)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=17 evalue=6.0)
coiled-coil 34..55 Tax=ACD3
ACD3_48_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

19679..20737
DNA (1059bp) protein (353aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=167 to=189)
transmembrane_regions (db=TMHMM db_id=tmhmm from=204 to=221)
transmembrane_regions (db=TMHMM db_id=tmhmm from=226 to=248)
ACD3_48_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(20874..22256)
DNA (1383bp) protein (461aa)
seg (db=Seg db_id=seg from=10 to=43)
seg (db=Seg db_id=seg from=331 to=342)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=131 evalue=1.2e-17)
ACD3_48_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(22278..23687)
DNA (1410bp) protein (470aa)
seg (db=Seg db_id=seg from=417 to=435)
seg (db=Seg db_id=seg from=10 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=131 evalue=3.1e-15)
ACD3_48_26
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(23725..25080)
DNA (1356bp) protein (452aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=170 to=183)
seg (db=Seg db_id=seg from=204 to=216)
seg (db=Seg db_id=seg from=9 to=30)
ACD3_48_27

Not on your lists

25335..25784
DNA (450bp) protein (150aa)
putative hydrolase
Nudix (db=superfamily db_id=SSF55811 from=1 to=141 evalue=1.1e-19 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=8 to=129 evalue=4.8e-14 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=11 to=127 evalue=3.5e-09 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD3_48_28
ACD3, Gracilibacteria, Bacteria

Not on your lists

25816..26397
DNA (582bp) protein (194aa)
lexA; LexA repressor (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] (db=KEGG evalue=4.0e-12 bit_score=74.3 identity=33.72 coverage=77.8350515463918)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=69 evalue=3.2e-11)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=67 evalue=6.1e-08 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
LexA_DNA_bind (db=HMMPfam db_id=PF01726 from=2 to=56 evalue=9.8e-08 interpro_id=IPR006199 interpro_description=LexA, DNA-binding domain GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
Displaying 28 items

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